| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is ybbP [H]
Identifier: 116690301
GI number: 116690301
Start: 2533418
End: 2536033
Strand: Reverse
Name: ybbP [H]
Synonym: Bcen2424_2280
Alternate gene names: 116690301
Gene position: 2536033-2533418 (Counterclockwise)
Preceding gene: 116690302
Following gene: 116690300
Centisome position: 72.79
GC content: 72.67
Gene sequence:
>2616_bases TTGAAGGGGCCGCAACACGCGGCGCAGCCGCCGGCCGGCCAACCCGGCCATGACGGGCGCGCGCATGCCGGCCGCTTCGG CCTGCGCGACCTGATCCACCAGGCCGCCCGGATGACCGCGCGCGACTGGCGCGCGGGCGAACTGACGCTGCTGGTGCTTG CGCTGGTGCTCGCGGTCGCGGCGCTGACGAGCGTCGGCTTTCTCGCCGATCGGCTGCGCCAGGGCCTTGAGCGCGACGCG CGCCAGATGCTCGGCGCCGATTTCGTCGTGCGCGCCGATCGCCCCGTCGATCCGTCGTTCGACCGGCAGGCCCGCGCGCT GGGCCTGCGTACCGCCACGACCGCCATCTTCCCGAGCATGATCGCGGCCGCCGCGGGCGCGCAGGCGGCCGACGCCGCGC CGTCGCGCCTCGCCGCCGTGAAGGCCGTGTCCCCCGGCTATCCGTTGCGCGGCGCGGTCGAGATTCTGCCGACCGGTGCG ACCGTCGCGCAGAAGGCGGCCGCGATTCCCGCGCCGGGCACCGTATGGGCCGATCCGGCGCTGCTCGATGCGCTGCACCT GAAGGCGGGCGATACGGTGCGCGTCGGGCTGCGCACGTTCACGGTCGCCGCGGCGATCACCCGCGAACTCGATCGCGGCT TTTCGTTCGTGAATTTTTCGCCGCGGCTGATGATGCGCGCAGACGAGCTCGCCGCGACGGGGCTCACGGGCTACGGCAGC CGCGTCACGTACCGGCTGCTGGTCGCCGGCGACGCACCGGCCATTGCGCGCTTCGAAACATATGCGCACGCACGCGTCGA CGGCGGGAAGCTGCGCGGCGTCGGGCTCGAGTCGTTGCAGGAAGGGCAGCCGCAGGTGCGGCAGACGCTGGATCGCGCGC GTCATTTCCTGACGCTCGTCGCGTTGCTGACCGCGCTGCTCGCGGCGGTCGCGATCGCGATGGCCGCGCAGCGCTACATG CGGCGTCATCTCGACGGCTGCGCGACGATGCGCTGCCTCGGCGTGAGCCGCCGCACGCTCGGCGCGCTGTTCGCGCTCGA ATTCGTTGGCGTCGGCATCGTGTCGGGCGCCGCGGGCGCGGTGCTGGGCTACGGCGGCCACTGGGCGCTGCTGGCCGCGC TCGGCAGCCTGATCGACGTCGTGCTGCCGCCGCCCACGCTGTGGCCGGCGCTGATCGGCATGGGCGCCGCGCTCGTGCTG CTGCTCGGTTTCGCGCTGCCGCCGCTCGTCCCGCTCACGCGCGTGCCGCCGGTACGCGTGCTGCGGCGCGAGTGGGGCGA CGCGTCGCGCACCGCGTGGGCCGCGTATGCGATCGGCGTCGTGCTGTTCGCGGGGCTGCTGATCGTGGCCGCCGGCAACC TGAAGCTCGGCCTGATCGTCGCGGGCGGCTTCGCCGGCGCGCTGGTCGGGTTCGCGCTGGTCGCCCGGCTCGTGCTGTTC GCCGCCGCGCGCGCGGTGCGCAATGCGCGCGTGGCCGCGGGCGTCGGCTGGCGTTACGCGCTGGCGTCGCTGCATCGGCG CGGCACGGCCAGCGCGTTGCAGATCACCGCGCTCGCGCTCGGCCTGATGTGCCTGCTACTGATCGCGATCACGCGCAACG ACCTCGTGGCGGGCTGGCGGCAGTCGACGCCGCCCGATGCGCCGAACCAGTTCCTGATCGACATCCAGCCCGACCAGCGC GCCGATGTCGCCGCCTATCTGGCCGCGCACGGCGTGCGCGACGCGGTGCCCGCGCCGATGGTGCGCGGCCGCCTGGTCGC GATCAACGGCAAGCCGGTGAATCCGGACGCGTATCCTTCCGAAGAGGCGCGCCGGCTCGTCGATCGCGAGTTCAACCTGT CGTATACGACCGAACTGCCGTCCGACAACCGGATCGTCGAAGGCGGCTGGTTCGGCAACGCGGCCACGCCGCAGATCTCG ATCGAAGCCGGCCTCGCGAAGACACTGAACGTGAAACCGGGCGATACGCTGCGCTTCGACGTAACGGGGCTGACGGTCGA CGCGCCGATCACCAGCGTGCGCAAGCTCGACTGGGGCTCGTTCCGCGTCAACTTTTTCGTGCTGATGCCGCCGCCGGTGC TGAAGGATTTCCCCGCCGTCTACCTGACCAGTTTCCATCTGCCGGCCTCGAACGCCGCGCTGCTCGATCCGCTGATCGCG CGCTACCCGAACCTGACCGCGATCGACGTCGCGCCGATCCTCGCGCAGTTGCAGCGGATGATGCTGCAGGTGGTCGGTGC GGTGCAGTTCCTGTTCGCGTTCACGCTCGCAGCCGGCGTGCTCGTGCTGTACACGGCGCTCGCCGGCTCGCGCGACGAGC GCGTGCGCGAGGCCGCGCTGCTGCGTGCACTCGGCGCGTCGCGCGCGCAGGTGGGTGCGGTGCAGCGTGCCGAATTCGTC GTGGTCGGCGCGCTGGCCGGCACGCTCGCGTCGGCGGGCGCGATCGCGGTCGGCTGGGTGCTCGCGTCGCGCGTGTTCGA CTTCCAGCTCGCCGTCGATCCGTGGCTCGTGCCGGCGGGCATCGCGGCCGGTGTCGTCTGCGCCGGTGCGGCCGGCTGGC TGAGCCTGCATAATGTGTTGCGGCGCCCCGCGCTGCAGTCGCTGCGCGACGCCTGA
Upstream 100 bases:
>100_bases CGTGGGCGCTGCCGCGGCTGTGGCGCGGCGTGTCGGGTGGTTTTCGCGGAATGGCGAACCACATGGTGTCGCGGCTCAAC TCGATCGGAGGGAAACGCGA
Downstream 100 bases:
>100_bases GCGTCGCCCGCGGCCCCGAAGATCCCGTTTTCCGACTATCCGTAATGACCGATGTGAATGACGATGCGCCGGCGCAGCCG ACGGCGTTCGAACTCGTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 871; Mature: 871
Protein sequence:
>871_residues MKGPQHAAQPPAGQPGHDGRAHAGRFGLRDLIHQAARMTARDWRAGELTLLVLALVLAVAALTSVGFLADRLRQGLERDA RQMLGADFVVRADRPVDPSFDRQARALGLRTATTAIFPSMIAAAAGAQAADAAPSRLAAVKAVSPGYPLRGAVEILPTGA TVAQKAAAIPAPGTVWADPALLDALHLKAGDTVRVGLRTFTVAAAITRELDRGFSFVNFSPRLMMRADELAATGLTGYGS RVTYRLLVAGDAPAIARFETYAHARVDGGKLRGVGLESLQEGQPQVRQTLDRARHFLTLVALLTALLAAVAIAMAAQRYM RRHLDGCATMRCLGVSRRTLGALFALEFVGVGIVSGAAGAVLGYGGHWALLAALGSLIDVVLPPPTLWPALIGMGAALVL LLGFALPPLVPLTRVPPVRVLRREWGDASRTAWAAYAIGVVLFAGLLIVAAGNLKLGLIVAGGFAGALVGFALVARLVLF AAARAVRNARVAAGVGWRYALASLHRRGTASALQITALALGLMCLLLIAITRNDLVAGWRQSTPPDAPNQFLIDIQPDQR ADVAAYLAAHGVRDAVPAPMVRGRLVAINGKPVNPDAYPSEEARRLVDREFNLSYTTELPSDNRIVEGGWFGNAATPQIS IEAGLAKTLNVKPGDTLRFDVTGLTVDAPITSVRKLDWGSFRVNFFVLMPPPVLKDFPAVYLTSFHLPASNAALLDPLIA RYPNLTAIDVAPILAQLQRMMLQVVGAVQFLFAFTLAAGVLVLYTALAGSRDERVREAALLRALGASRAQVGAVQRAEFV VVGALAGTLASAGAIAVGWVLASRVFDFQLAVDPWLVPAGIAAGVVCAGAAGWLSLHNVLRRPALQSLRDA
Sequences:
>Translated_871_residues MKGPQHAAQPPAGQPGHDGRAHAGRFGLRDLIHQAARMTARDWRAGELTLLVLALVLAVAALTSVGFLADRLRQGLERDA RQMLGADFVVRADRPVDPSFDRQARALGLRTATTAIFPSMIAAAAGAQAADAAPSRLAAVKAVSPGYPLRGAVEILPTGA TVAQKAAAIPAPGTVWADPALLDALHLKAGDTVRVGLRTFTVAAAITRELDRGFSFVNFSPRLMMRADELAATGLTGYGS RVTYRLLVAGDAPAIARFETYAHARVDGGKLRGVGLESLQEGQPQVRQTLDRARHFLTLVALLTALLAAVAIAMAAQRYM RRHLDGCATMRCLGVSRRTLGALFALEFVGVGIVSGAAGAVLGYGGHWALLAALGSLIDVVLPPPTLWPALIGMGAALVL LLGFALPPLVPLTRVPPVRVLRREWGDASRTAWAAYAIGVVLFAGLLIVAAGNLKLGLIVAGGFAGALVGFALVARLVLF AAARAVRNARVAAGVGWRYALASLHRRGTASALQITALALGLMCLLLIAITRNDLVAGWRQSTPPDAPNQFLIDIQPDQR ADVAAYLAAHGVRDAVPAPMVRGRLVAINGKPVNPDAYPSEEARRLVDREFNLSYTTELPSDNRIVEGGWFGNAATPQIS IEAGLAKTLNVKPGDTLRFDVTGLTVDAPITSVRKLDWGSFRVNFFVLMPPPVLKDFPAVYLTSFHLPASNAALLDPLIA RYPNLTAIDVAPILAQLQRMMLQVVGAVQFLFAFTLAAGVLVLYTALAGSRDERVREAALLRALGASRAQVGAVQRAEFV VVGALAGTLASAGAIAVGWVLASRVFDFQLAVDPWLVPAGIAAGVVCAGAAGWLSLHNVLRRPALQSLRDA >Mature_871_residues MKGPQHAAQPPAGQPGHDGRAHAGRFGLRDLIHQAARMTARDWRAGELTLLVLALVLAVAALTSVGFLADRLRQGLERDA RQMLGADFVVRADRPVDPSFDRQARALGLRTATTAIFPSMIAAAAGAQAADAAPSRLAAVKAVSPGYPLRGAVEILPTGA TVAQKAAAIPAPGTVWADPALLDALHLKAGDTVRVGLRTFTVAAAITRELDRGFSFVNFSPRLMMRADELAATGLTGYGS RVTYRLLVAGDAPAIARFETYAHARVDGGKLRGVGLESLQEGQPQVRQTLDRARHFLTLVALLTALLAAVAIAMAAQRYM RRHLDGCATMRCLGVSRRTLGALFALEFVGVGIVSGAAGAVLGYGGHWALLAALGSLIDVVLPPPTLWPALIGMGAALVL LLGFALPPLVPLTRVPPVRVLRREWGDASRTAWAAYAIGVVLFAGLLIVAAGNLKLGLIVAGGFAGALVGFALVARLVLF AAARAVRNARVAAGVGWRYALASLHRRGTASALQITALALGLMCLLLIAITRNDLVAGWRQSTPPDAPNQFLIDIQPDQR ADVAAYLAAHGVRDAVPAPMVRGRLVAINGKPVNPDAYPSEEARRLVDREFNLSYTTELPSDNRIVEGGWFGNAATPQIS IEAGLAKTLNVKPGDTLRFDVTGLTVDAPITSVRKLDWGSFRVNFFVLMPPPVLKDFPAVYLTSFHLPASNAALLDPLIA RYPNLTAIDVAPILAQLQRMMLQVVGAVQFLFAFTLAAGVLVLYTALAGSRDERVREAALLRALGASRAQVGAVQRAEFV VVGALAGTLASAGAIAVGWVLASRVFDFQLAVDPWLVPAGIAAGVVCAGAAGWLSLHNVLRRPALQSLRDA
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=825, Percent_Identity=31.7575757575758, Blast_Score=325, Evalue=7e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 91696; Mature: 91696
Theoretical pI: Translated: 10.90; Mature: 10.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGPQHAAQPPAGQPGHDGRAHAGRFGLRDLIHQAARMTARDWRAGELTLLVLALVLAVA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH ALTSVGFLADRLRQGLERDARQMLGADFVVRADRPVDPSFDRQARALGLRTATTAIFPSM HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH IAAAAGAQAADAAPSRLAAVKAVSPGYPLRGAVEILPTGATVAQKAAAIPAPGTVWADPA HHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCHH LLDALHLKAGDTVRVGLRTFTVAAAITRELDRGFSFVNFSPRLMMRADELAATGLTGYGS HHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCCCCC RVTYRLLVAGDAPAIARFETYAHARVDGGKLRGVGLESLQEGQPQVRQTLDRARHFLTLV CEEEEEEEECCCCHHHHHHHHHHEECCCCCEECCCHHHHHCCCHHHHHHHHHHHHHHHHH ALLTALLAAVAIAMAAQRYMRRHLDGCATMRCLGVSRRTLGALFALEFVGVGIVSGAAGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCH VLGYGGHWALLAALGSLIDVVLPPPTLWPALIGMGAALVLLLGFALPPLVPLTRVPPVRV HCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH LRREWGDASRTAWAAYAIGVVLFAGLLIVAAGNLKLGLIVAGGFAGALVGFALVARLVLF HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHH AAARAVRNARVAAGVGWRYALASLHRRGTASALQITALALGLMCLLLIAITRNDLVAGWR HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC QSTPPDAPNQFLIDIQPDQRADVAAYLAAHGVRDAVPAPMVRGRLVAINGKPVNPDAYPS CCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCC EEARRLVDREFNLSYTTELPSDNRIVEGGWFGNAATPQISIEAGLAKTLNVKPGDTLRFD HHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCEEEEECCCHHEECCCCCCEEEEE VTGLTVDAPITSVRKLDWGSFRVNFFVLMPPPVLKDFPAVYLTSFHLPASNAALLDPLIA EEEEEECCCHHHHHHCCCCCEEEEEEEEECCHHHHHCCHHHHEEECCCCCCCHHHHHHHH RYPNLTAIDVAPILAQLQRMMLQVVGAVQFLFAFTLAAGVLVLYTALAGSRDERVREAAL HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LRALGASRAQVGAVQRAEFVVVGALAGTLASAGAIAVGWVLASRVFDFQLAVDPWLVPAG HHHHCCCHHHHHHHHHHHEEEEHHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCCHHHH IAAGVVCAGAAGWLSLHNVLRRPALQSLRDA HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKGPQHAAQPPAGQPGHDGRAHAGRFGLRDLIHQAARMTARDWRAGELTLLVLALVLAVA CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH ALTSVGFLADRLRQGLERDARQMLGADFVVRADRPVDPSFDRQARALGLRTATTAIFPSM HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHH IAAAAGAQAADAAPSRLAAVKAVSPGYPLRGAVEILPTGATVAQKAAAIPAPGTVWADPA HHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCHH LLDALHLKAGDTVRVGLRTFTVAAAITRELDRGFSFVNFSPRLMMRADELAATGLTGYGS HHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCCCCC RVTYRLLVAGDAPAIARFETYAHARVDGGKLRGVGLESLQEGQPQVRQTLDRARHFLTLV CEEEEEEEECCCCHHHHHHHHHHEECCCCCEECCCHHHHHCCCHHHHHHHHHHHHHHHHH ALLTALLAAVAIAMAAQRYMRRHLDGCATMRCLGVSRRTLGALFALEFVGVGIVSGAAGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCH VLGYGGHWALLAALGSLIDVVLPPPTLWPALIGMGAALVLLLGFALPPLVPLTRVPPVRV HCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH LRREWGDASRTAWAAYAIGVVLFAGLLIVAAGNLKLGLIVAGGFAGALVGFALVARLVLF HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHH AAARAVRNARVAAGVGWRYALASLHRRGTASALQITALALGLMCLLLIAITRNDLVAGWR HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC QSTPPDAPNQFLIDIQPDQRADVAAYLAAHGVRDAVPAPMVRGRLVAINGKPVNPDAYPS CCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCC EEARRLVDREFNLSYTTELPSDNRIVEGGWFGNAATPQISIEAGLAKTLNVKPGDTLRFD HHHHHHHCCCCCCEEEECCCCCCEEEECCCCCCCCCCEEEEECCCHHEECCCCCCEEEEE VTGLTVDAPITSVRKLDWGSFRVNFFVLMPPPVLKDFPAVYLTSFHLPASNAALLDPLIA EEEEEECCCHHHHHHCCCCCEEEEEEEEECCHHHHHCCHHHHEEECCCCCCCHHHHHHHH RYPNLTAIDVAPILAQLQRMMLQVVGAVQFLFAFTLAAGVLVLYTALAGSRDERVREAAL HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH LRALGASRAQVGAVQRAEFVVVGALAGTLASAGAIAVGWVLASRVFDFQLAVDPWLVPAG HHHHCCCHHHHHHHHHHHEEEEHHHHHHHHHCCHHHHHHHHHHHHHHEEEECCCCCHHHH IAAGVVCAGAAGWLSLHNVLRRPALQSLRDA HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]