Click here to switch to the map view.

The map label for this gene is nodN [H]

Identifier: 116690250

GI number: 116690250

Start: 2484390

End: 2484866

Strand: Reverse

Name: nodN [H]

Synonym: Bcen2424_2229

Alternate gene names: 116690250

Gene position: 2484866-2484390 (Counterclockwise)

Preceding gene: 116690251

Following gene: 116690247

Centisome position: 71.32

GC content: 69.81

Gene sequence:

>477_bases
ATGACCGACGTGACCTTGCCGCTGATCGCCTCGGCCCAGGCGCTGCAGGCGCGGGTCGGCGCGGAGCCGCTCGCGAGCGG
CTGGATCGAGATCGACCAGCCGCGCGTCGACGGTTTCGCCGACGCGACCGGCGATCATCAATGGATTCACGTCGACCCCG
AACGCGCGCGGCGCGAGTCGCCGTTCGGCGGCCCGATCGCGCACGGATTCCTGACGCTGTCGCTGATTCCGGCGTTGATG
ACCGACGCGATGCGCTTCGAGCAGAAGATGGGCGTGAACTACGGGCTGAACCGCGTGCGGTTCCTGAAGCCGGTGCCGGT
CGGGGCGCGCGTGCGTGCGCTGTTCGCGGTGAAGGAAACCGCCGACGCCGCGCGCGGCGGCATCCAGGTGACGTGGTCGG
TATCGGTGCAGGTCGAGCGCCCCGACGCGCCGCTGCCGGTGTGCGCGGCGGAGTTCATCACGCTGCATTACTTCTGA

Upstream 100 bases:

>100_bases
TATCGACCGAATGGGTCGGCGTGAACGAAGCCGGCCAGACGGTGATCAGCGTGCACACCAAAGTGATTTTCGGGCTGCGC
CATCCGGGAGGCGCGAACCC

Downstream 100 bases:

>100_bases
AGCACGGAGCGGCATGCACGGATGCCGCTCCGCCCGCCTCGTGCGGGTCAGCGCTTCGCGTATTGCGTTGCGCCGAACAG
CACCTCGCGTGCCTTGTCGT

Product: dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTDVTLPLIASAQALQARVGAEPLASGWIEIDQPRVDGFADATGDHQWIHVDPERARRESPFGGPIAHGFLTLSLIPALM
TDAMRFEQKMGVNYGLNRVRFLKPVPVGARVRALFAVKETADAARGGIQVTWSVSVQVERPDAPLPVCAAEFITLHYF

Sequences:

>Translated_158_residues
MTDVTLPLIASAQALQARVGAEPLASGWIEIDQPRVDGFADATGDHQWIHVDPERARRESPFGGPIAHGFLTLSLIPALM
TDAMRFEQKMGVNYGLNRVRFLKPVPVGARVRALFAVKETADAARGGIQVTWSVSVQVERPDAPLPVCAAEFITLHYF
>Mature_157_residues
TDVTLPLIASAQALQARVGAEPLASGWIEIDQPRVDGFADATGDHQWIHVDPERARRESPFGGPIAHGFLTLSLIPALMT
DAMRFEQKMGVNYGLNRVRFLKPVPVGARVRALFAVKETADAARGGIQVTWSVSVQVERPDAPLPVCAAEFITLHYF

Specific function: Involved in the production of the root hair deformation (HAD) factor specifically on medicago [H]

COG id: COG2030

COG function: function code I; Acyl dehydratase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To the R.meliloti counterpart [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002539 [H]

Pfam domain/function: PF01575 MaoC_dehydratas [H]

EC number: NA

Molecular weight: Translated: 17247; Mature: 17116

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVTLPLIASAQALQARVGAEPLASGWIEIDQPRVDGFADATGDHQWIHVDPERARRES
CCCCCHHHHHHHHHHHHHCCCCCHHCCCEEECCCCCCCCCCCCCCCCEEEECHHHHHCCC
PFGGPIAHGFLTLSLIPALMTDAMRFEQKMGVNYGLNRVRFLKPVPVGARVRALFAVKET
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
ADAARGGIQVTWSVSVQVERPDAPLPVCAAEFITLHYF
HHHHCCCEEEEEEEEEEEECCCCCCCHHHHHHEEEECC
>Mature Secondary Structure 
TDVTLPLIASAQALQARVGAEPLASGWIEIDQPRVDGFADATGDHQWIHVDPERARRES
CCCCHHHHHHHHHHHHHCCCCCHHCCCEEECCCCCCCCCCCCCCCCEEEECHHHHHCCC
PFGGPIAHGFLTLSLIPALMTDAMRFEQKMGVNYGLNRVRFLKPVPVGARVRALFAVKET
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHH
ADAARGGIQVTWSVSVQVERPDAPLPVCAAEFITLHYF
HHHHCCCEEEEEEEEEEEECCCCCCCHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3132583 [H]