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The map label for this gene is csgD [C]

Identifier: 116690240

GI number: 116690240

Start: 2475396

End: 2476232

Strand: Direct

Name: csgD [C]

Synonym: Bcen2424_2219

Alternate gene names: 116690240

Gene position: 2475396-2476232 (Clockwise)

Preceding gene: 116690239

Following gene: 116690241

Centisome position: 71.05

GC content: 68.46

Gene sequence:

>837_bases
ATGCGGTTCTTGGTGCTTAACTCAGACGCCGAACGGCGTGACGGACTGAAGGCCCTGCTGCGGCAGATCGACCGGCACGC
CAGCATCAACGATGCGCCCGACAGTTTCCTGGCGCGCCGGCTACTGCGCACCCAGCGTTTCGACCTCGTCGCGATCGACT
GGCTCGACGTGGGCCGGCTCAGCGAGCTCCAGGCACTCGGCAACGCGTGCTCGCCGACGCCGATCGCCGTCCTGGTCGAC
GAAGTCTCGCCCGAAGCCATCCAGCGCTTCTTCAACTACGGCGTCGCGGGCGTGATCCCGCATTCCACGCGGCCGCACCT
GATCGTACGTGCGCTCGAGATCGTGCTGCTGGGCGGGCACTACATTCCGCCGATCGCCCTCAGCCTGCTGCCCACCCCGA
CGACGGCACGCCAGGATGCCCATTTCCAGACGCTCGCCGGCTCGCTGCCCCGCCGCCCGCCGAGCGGCCTCCTGTCGCCG
CGGCAAGCGCAGATCATGCGGTTCGTCCACATGGGCAGCACGAACAAGATGATCGCGCGTACGCTCGGCATCAGCGAAGG
CACCGTGAAGATCCACCTCGCGAGCATCTTCCAGCAGCTCGGCGCAGCAAACCGCGCCGCCGCCGTCGCGATCTACAACG
GCTGGCTGTCGCCCCATCTCGAGGTGCTGCTGGCGAACCGCAACCGCACCCGCAAACCGGCCATCGGCGAACACGGCCCG
GTTCCGCTGCGTACACAACGGCATGACCGTCCGTACCCGTTGCCTACCGCCCATGCCGGCACGCAGGACCTGCCGCTCGC
CACCGAACCGCGGCCACGGTTCCGGCGCGGACGCTAG

Upstream 100 bases:

>100_bases
TAAGCCTTTCAGCCAAGCAGACATCGTGTAAGGTCTTTGTCATTATCGGGACCAGCTTATACCCGATAGCAGTCGATGAC
TCACCTTACGGAGATTGAAT

Downstream 100 bases:

>100_bases
GCAAACAGTCTCGATATTGCGACGATCGGGCATGTGCAGATTCCCACCTTTGATGCTCAACGAGTAATATGGACGCATGG
GTTTTCTTTTCACACCGCTT

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Two-Component Response Regulator; Transcriptional Regulator LuxR Family; Response Regulator; LuxR Family Two Component Transcriptional Regulator; Two Component Transcriptional Regulator LuxR Family

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MRFLVLNSDAERRDGLKALLRQIDRHASINDAPDSFLARRLLRTQRFDLVAIDWLDVGRLSELQALGNACSPTPIAVLVD
EVSPEAIQRFFNYGVAGVIPHSTRPHLIVRALEIVLLGGHYIPPIALSLLPTPTTARQDAHFQTLAGSLPRRPPSGLLSP
RQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGAANRAAAVAIYNGWLSPHLEVLLANRNRTRKPAIGEHGP
VPLRTQRHDRPYPLPTAHAGTQDLPLATEPRPRFRRGR

Sequences:

>Translated_278_residues
MRFLVLNSDAERRDGLKALLRQIDRHASINDAPDSFLARRLLRTQRFDLVAIDWLDVGRLSELQALGNACSPTPIAVLVD
EVSPEAIQRFFNYGVAGVIPHSTRPHLIVRALEIVLLGGHYIPPIALSLLPTPTTARQDAHFQTLAGSLPRRPPSGLLSP
RQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGAANRAAAVAIYNGWLSPHLEVLLANRNRTRKPAIGEHGP
VPLRTQRHDRPYPLPTAHAGTQDLPLATEPRPRFRRGR
>Mature_278_residues
MRFLVLNSDAERRDGLKALLRQIDRHASINDAPDSFLARRLLRTQRFDLVAIDWLDVGRLSELQALGNACSPTPIAVLVD
EVSPEAIQRFFNYGVAGVIPHSTRPHLIVRALEIVLLGGHYIPPIALSLLPTPTTARQDAHFQTLAGSLPRRPPSGLLSP
RQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGAANRAAAVAIYNGWLSPHLEVLLANRNRTRKPAIGEHGP
VPLRTQRHDRPYPLPTAHAGTQDLPLATEPRPRFRRGR

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30764; Mature: 30764

Theoretical pI: Translated: 11.73; Mature: 11.73

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFLVLNSDAERRDGLKALLRQIDRHASINDAPDSFLARRLLRTQRFDLVAIDWLDVGRL
CEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHH
SELQALGNACSPTPIAVLVDEVSPEAIQRFFNYGVAGVIPHSTRPHLIVRALEIVLLGGH
HHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCC
YIPPIALSLLPTPTTARQDAHFQTLAGSLPRRPPSGLLSPRQAQIMRFVHMGSTNKMIAR
CCCCHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHH
TLGISEGTVKIHLASIFQQLGAANRAAAVAIYNGWLSPHLEVLLANRNRTRKPAIGEHGP
HHCCCCCEEEEEHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCC
VPLRTQRHDRPYPLPTAHAGTQDLPLATEPRPRFRRGR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFLVLNSDAERRDGLKALLRQIDRHASINDAPDSFLARRLLRTQRFDLVAIDWLDVGRL
CEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHH
SELQALGNACSPTPIAVLVDEVSPEAIQRFFNYGVAGVIPHSTRPHLIVRALEIVLLGGH
HHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHCCCC
YIPPIALSLLPTPTTARQDAHFQTLAGSLPRRPPSGLLSPRQAQIMRFVHMGSTNKMIAR
CCCCHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHH
TLGISEGTVKIHLASIFQQLGAANRAAAVAIYNGWLSPHLEVLLANRNRTRKPAIGEHGP
HHCCCCCEEEEEHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCC
VPLRTQRHDRPYPLPTAHAGTQDLPLATEPRPRFRRGR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA