| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116690230
Identifier: 116690230
GI number: 116690230
Start: 2459339
End: 2459890
Strand: Reverse
Name: 116690230
Synonym: Bcen2424_2209
Alternate gene names: NA
Gene position: 2459890-2459339 (Counterclockwise)
Preceding gene: 116690231
Following gene: 116690229
Centisome position: 70.61
GC content: 63.41
Gene sequence:
>552_bases ATGTTGGGTTCTTCGTTCATCCGCACGACGGTTGCGGTAGCGGCGGCGCTTGCCGCGATGTCGGCCTCGGCTGCCGAGTA TCCGATCGGCAAGCAGCAGATCCAGGGCGGCATGGAAATCGGCGCGGTGTATCTGCAGCCGATCACGATGGACCCGGAAG GCATGATGCGCAAGGCGTCGGATTCCGACATTCACCTCGAGGCCGACATCCACGCGGTCAAGAACAACCCGACCGGTTTC GCGGAAGGCGACTGGATGCCGTACCTGCAGGTCACGTACAAGCTGACGAAGCAGGGCGACACGAAGTGGAAGGCCGAAGG CGACCTGATGGGCATGGTCGCGAGCGACGGCCCGCACTACGGCGACAACGTGAAGCTCGCCGGCCCGGGCAAGTATCACC TGACGATGGTCGTCAAGCCGCCGATGCAGTCGGGTCACATGGCGTTCGGTCGCCACGTCGACAAGGAAACGGGCGTGGGC CCGTGGTTCAAGCCCATCACGCTCGAGTACGACTTCCCGTTCGCCGGTATCGGCAAGAAGGGCGGTTACTGA
Upstream 100 bases:
>100_bases TTCGCATTAACGTTCTTCGTCGCGTTAGTGTTTCCAGCGGGCGGCCCCGGCGGCGGCTCGCATGTCGTCAAGATAGTCAG ACAAATAACAAGGAGTGTCC
Downstream 100 bases:
>100_bases TCGGTGGCATCACGAACGGCGCGCTTCGGCGCGCCGTCGGCGTAGAGAACCCAGAATGAAAATTCCCCAGAAAATCGTTG CCGCGGCCGCTGCGCTGTGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 183; Mature: 183
Protein sequence:
>183_residues MLGSSFIRTTVAVAAALAAMSASAAEYPIGKQQIQGGMEIGAVYLQPITMDPEGMMRKASDSDIHLEADIHAVKNNPTGF AEGDWMPYLQVTYKLTKQGDTKWKAEGDLMGMVASDGPHYGDNVKLAGPGKYHLTMVVKPPMQSGHMAFGRHVDKETGVG PWFKPITLEYDFPFAGIGKKGGY
Sequences:
>Translated_183_residues MLGSSFIRTTVAVAAALAAMSASAAEYPIGKQQIQGGMEIGAVYLQPITMDPEGMMRKASDSDIHLEADIHAVKNNPTGF AEGDWMPYLQVTYKLTKQGDTKWKAEGDLMGMVASDGPHYGDNVKLAGPGKYHLTMVVKPPMQSGHMAFGRHVDKETGVG PWFKPITLEYDFPFAGIGKKGGY >Mature_183_residues MLGSSFIRTTVAVAAALAAMSASAAEYPIGKQQIQGGMEIGAVYLQPITMDPEGMMRKASDSDIHLEADIHAVKNNPTGF AEGDWMPYLQVTYKLTKQGDTKWKAEGDLMGMVASDGPHYGDNVKLAGPGKYHLTMVVKPPMQSGHMAFGRHVDKETGVG PWFKPITLEYDFPFAGIGKKGGY
Specific function: Unknown
COG id: COG3470
COG function: function code P; Uncharacterized protein probably involved in high-affinity Fe2+ transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0423 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018470 [H]
Pfam domain/function: PF10634 Iron_transport [H]
EC number: NA
Molecular weight: Translated: 19740; Mature: 19740
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.6 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 6.6 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGSSFIRTTVAVAAALAAMSASAAEYPIGKQQIQGGMEIGAVYLQPITMDPEGMMRKAS CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEEEEEEEECHHHHHHCCC DSDIHLEADIHAVKNNPTGFAEGDWMPYLQVTYKLTKQGDTKWKAEGDLMGMVASDGPHY CCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCEEEEEECCCCCC GDNVKLAGPGKYHLTMVVKPPMQSGHMAFGRHVDKETGVGPWFKPITLEYDFPFAGIGKK CCCEEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC GGY CCC >Mature Secondary Structure MLGSSFIRTTVAVAAALAAMSASAAEYPIGKQQIQGGMEIGAVYLQPITMDPEGMMRKAS CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEEEEEEEECHHHHHHCCC DSDIHLEADIHAVKNNPTGFAEGDWMPYLQVTYKLTKQGDTKWKAEGDLMGMVASDGPHY CCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCEEEEEECCCCCC GDNVKLAGPGKYHLTMVVKPPMQSGHMAFGRHVDKETGVGPWFKPITLEYDFPFAGIGKK CCCEEEECCCCEEEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC GGY CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12271122 [H]