| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116690107
Identifier: 116690107
GI number: 116690107
Start: 2316000
End: 2317622
Strand: Direct
Name: 116690107
Synonym: Bcen2424_2086
Alternate gene names: NA
Gene position: 2316000-2317622 (Clockwise)
Preceding gene: 116690106
Following gene: 116690109
Centisome position: 66.48
GC content: 66.54
Gene sequence:
>1623_bases ATGTTACGGCTAAGCGAAATTAAACTCCCCCTCGACCACCCCGAGAGCGCGCTCGAGGCCGCGATTCGCGCGCGCCTCGC GGAGCTCGGCGTGGCGCCAGACGAACTGCTCCGTTACACCGTGTTCCGCCGCGCGCACGACGCGCGCAAGCGTGCCGACA TCAAGCTCACGTATATCGTCGATATCGAAGTCAAGGACGAAGCGGCCGCGCTCAAGCGCATCGCCGGCAAGCCGCATTGC GGCGTGACGCCCGACATGGCGTACCACTTCGTCACGAAGGCGCCCGAACACGCCGACTTCCTGCGCCCGGTCGTCATCGG CATGGGGCCGTGCGGACTGTTCGCGGGGCTGATCCTCGCGCAGATGGGGTTCCGTCCCATCATCCTCGAACGCGGCAAGG CCGTGCGCGAGCGCACCAAGGACACCTTCGGCCTGTGGCGCAAGAGCGTGCTCAATCCCGAATCCAACGTGCAGTTCGGC GAAGGCGGCGCGGGGACGTTTTCCGACGGCAAGCTGTACAGCCAGATCAAGGATCCGAACCACTATGGCCGCAAGGTGCT GGACGAATTCGTCAAGGCCGGCGCGCCCGAGGACATCCTGTACCTGAGCCGCCCGCACATCGGCACCTTCCGCCTCGTCA GCATGGTGGAAAAAATGCGCGCGTCGATCCACGAACTCGGTGGCGAAGTGCGTTTCGAAACCCGCGTCGACGACATCGAA ATCGACCAGGGCAAGGTGCGCGCGCTCAAGCTGTCGAACGGCGAAACGCTGCGGTGCGACCGCGTGGTGCTGGCCGTGGG CCACAGCGCGCGCGACACGTTCCAGATGCTGCACGACCGCGGCGTCTATATCGAAGCGAAACCGTTCTCGCTCGGTTTCC GCATCGAGCATCCGCAGGGGCTGATCGATCGCAGCCGCTTCGGCAAGTTCGCGGGCCACAAGCAGCTCGGCGCGGCCGAC TACAAGGTGGTCCACCACTGCAGCAACGGGCGCGCGGTCTACAGCTTCTGCATGTGCCCGGGCGGCACGGTGGTCGCCGC GACCTCGGAGCCGGGTCGCGTGGTCACCAACGGGATGAGCCAGTATTCCCGCGCGGAGCGCAACGCGAATGCGGGCATCG TCGTCGGCATCACGCCGGACGATTATCCGGGCGGCCCGCTCGCCGGCATCGCGTTCCAGCGCAAATGGGAAGAACGCGCG TTCGAGCTCGGCGGCGGTGACTACCGCGCGCCGGGGCAGCTGGTCGGCGATTTCATCGCGGGCCGGCCGTCGACGTCGCT GGGCTCGGTGGAGCCGTCGTACAAGCCCGGCGTGAATCCGACCGACCTCAGTACCGCACTGCCGGACTACGTGATCGAAG CGATCCGCGAAGCGCTGCCCGAGATCGACAAGAAGATCGCCGGCTTCGCGATGCACGACGCCGTGCTCACCGGCGTGGAG ACGCGCACGTCGTCGCCGATCCGGATTCGACGCAAGGACGACTACCAGAGCATGAACGTCGAAGGCCTGTATCCGGCCGG CGAAGGCGCGGGATATGCGGGCGGCATCTATTCGGCGGCGATCGACGGCATCGAAGTCGCGCAGGCGGTGGCGCTCAGTC TGACGTCGGGGCACGCGTCCTGA
Upstream 100 bases:
>100_bases TTGCGTCCGGCATGCCCGCGCGGCGAACAACGCCGCCGGGGTGCCGGCCCCGCCTGTATCAACACCGCCACGGCGCCGTG GCAATCGCATCCGAGTCCCC
Downstream 100 bases:
>100_bases CCTGCGGCGCAGGGTCGGGGCGCGCAGGTGCGTGACCTGAGCGCCGCCGGCCTGCCCCGCCGTGGCTTCATGGACGCTTC ATTCGTGGCTCGACGCACGG
Product: FAD dependent oxidoreductase
Products: NA
Alternate protein names: ORF1 [H]
Number of amino acids: Translated: 540; Mature: 540
Protein sequence:
>540_residues MLRLSEIKLPLDHPESALEAAIRARLAELGVAPDELLRYTVFRRAHDARKRADIKLTYIVDIEVKDEAAALKRIAGKPHC GVTPDMAYHFVTKAPEHADFLRPVVIGMGPCGLFAGLILAQMGFRPIILERGKAVRERTKDTFGLWRKSVLNPESNVQFG EGGAGTFSDGKLYSQIKDPNHYGRKVLDEFVKAGAPEDILYLSRPHIGTFRLVSMVEKMRASIHELGGEVRFETRVDDIE IDQGKVRALKLSNGETLRCDRVVLAVGHSARDTFQMLHDRGVYIEAKPFSLGFRIEHPQGLIDRSRFGKFAGHKQLGAAD YKVVHHCSNGRAVYSFCMCPGGTVVAATSEPGRVVTNGMSQYSRAERNANAGIVVGITPDDYPGGPLAGIAFQRKWEERA FELGGGDYRAPGQLVGDFIAGRPSTSLGSVEPSYKPGVNPTDLSTALPDYVIEAIREALPEIDKKIAGFAMHDAVLTGVE TRTSSPIRIRRKDDYQSMNVEGLYPAGEGAGYAGGIYSAAIDGIEVAQAVALSLTSGHAS
Sequences:
>Translated_540_residues MLRLSEIKLPLDHPESALEAAIRARLAELGVAPDELLRYTVFRRAHDARKRADIKLTYIVDIEVKDEAAALKRIAGKPHC GVTPDMAYHFVTKAPEHADFLRPVVIGMGPCGLFAGLILAQMGFRPIILERGKAVRERTKDTFGLWRKSVLNPESNVQFG EGGAGTFSDGKLYSQIKDPNHYGRKVLDEFVKAGAPEDILYLSRPHIGTFRLVSMVEKMRASIHELGGEVRFETRVDDIE IDQGKVRALKLSNGETLRCDRVVLAVGHSARDTFQMLHDRGVYIEAKPFSLGFRIEHPQGLIDRSRFGKFAGHKQLGAAD YKVVHHCSNGRAVYSFCMCPGGTVVAATSEPGRVVTNGMSQYSRAERNANAGIVVGITPDDYPGGPLAGIAFQRKWEERA FELGGGDYRAPGQLVGDFIAGRPSTSLGSVEPSYKPGVNPTDLSTALPDYVIEAIREALPEIDKKIAGFAMHDAVLTGVE TRTSSPIRIRRKDDYQSMNVEGLYPAGEGAGYAGGIYSAAIDGIEVAQAVALSLTSGHAS >Mature_540_residues MLRLSEIKLPLDHPESALEAAIRARLAELGVAPDELLRYTVFRRAHDARKRADIKLTYIVDIEVKDEAAALKRIAGKPHC GVTPDMAYHFVTKAPEHADFLRPVVIGMGPCGLFAGLILAQMGFRPIILERGKAVRERTKDTFGLWRKSVLNPESNVQFG EGGAGTFSDGKLYSQIKDPNHYGRKVLDEFVKAGAPEDILYLSRPHIGTFRLVSMVEKMRASIHELGGEVRFETRVDDIE IDQGKVRALKLSNGETLRCDRVVLAVGHSARDTFQMLHDRGVYIEAKPFSLGFRIEHPQGLIDRSRFGKFAGHKQLGAAD YKVVHHCSNGRAVYSFCMCPGGTVVAATSEPGRVVTNGMSQYSRAERNANAGIVVGITPDDYPGGPLAGIAFQRKWEERA FELGGGDYRAPGQLVGDFIAGRPSTSLGSVEPSYKPGVNPTDLSTALPDYVIEAIREALPEIDKKIAGFAMHDAVLTGVE TRTSSPIRIRRKDDYQSMNVEGLYPAGEGAGYAGGIYSAAIDGIEVAQAVALSLTSGHAS
Specific function: Unknown
COG id: COG2509
COG function: function code R; Uncharacterized FAD-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 58786; Mature: 58786
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRLSEIKLPLDHPESALEAAIRARLAELGVAPDELLRYTVFRRAHDARKRADIKLTYIV CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE DIEVKDEAAALKRIAGKPHCGVTPDMAYHFVTKAPEHADFLRPVVIGMGPCGLFAGLILA EEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH QMGFRPIILERGKAVRERTKDTFGLWRKSVLNPESNVQFGEGGAGTFSDGKLYSQIKDPN HHCCCEEEHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHCCCH HYGRKVLDEFVKAGAPEDILYLSRPHIGTFRLVSMVEKMRASIHELGGEVRFETRVDDIE HHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEE IDQGKVRALKLSNGETLRCDRVVLAVGHSARDTFQMLHDRGVYIEAKPFSLGFRIEHPQG ECCCCEEEEEECCCCEEEECEEEEEECCCHHHHHHHHHCCCCEEEECCCEEEEEEECCCC LIDRSRFGKFAGHKQLGAADYKVVHHCSNGRAVYSFCMCPGGTVVAATSEPGRVVTNGMS HHHHHHHHHHCCCCCCCCCHHHHEEECCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHH QYSRAERNANAGIVVGITPDDYPGGPLAGIAFQRKWEERAFELGGGDYRAPGQLVGDFIA HHHHHHCCCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC GRPSTSLGSVEPSYKPGVNPTDLSTALPDYVIEAIREALPEIDKKIAGFAMHDAVLTGVE CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TRTSSPIRIRRKDDYQSMNVEGLYPAGEGAGYAGGIYSAAIDGIEVAQAVALSLTSGHAS CCCCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MLRLSEIKLPLDHPESALEAAIRARLAELGVAPDELLRYTVFRRAHDARKRADIKLTYIV CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE DIEVKDEAAALKRIAGKPHCGVTPDMAYHFVTKAPEHADFLRPVVIGMGPCGLFAGLILA EEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHH QMGFRPIILERGKAVRERTKDTFGLWRKSVLNPESNVQFGEGGAGTFSDGKLYSQIKDPN HHCCCEEEHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCHHHHHHCCCH HYGRKVLDEFVKAGAPEDILYLSRPHIGTFRLVSMVEKMRASIHELGGEVRFETRVDDIE HHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEE IDQGKVRALKLSNGETLRCDRVVLAVGHSARDTFQMLHDRGVYIEAKPFSLGFRIEHPQG ECCCCEEEEEECCCCEEEECEEEEEECCCHHHHHHHHHCCCCEEEECCCEEEEEEECCCC LIDRSRFGKFAGHKQLGAADYKVVHHCSNGRAVYSFCMCPGGTVVAATSEPGRVVTNGMS HHHHHHHHHHCCCCCCCCCHHHHEEECCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHH QYSRAERNANAGIVVGITPDDYPGGPLAGIAFQRKWEERAFELGGGDYRAPGQLVGDFIA HHHHHHCCCCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHC GRPSTSLGSVEPSYKPGVNPTDLSTALPDYVIEAIREALPEIDKKIAGFAMHDAVLTGVE CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TRTSSPIRIRRKDDYQSMNVEGLYPAGEGAGYAGGIYSAAIDGIEVAQAVALSLTSGHAS CCCCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396545 [H]