| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is gltX [H]
Identifier: 116690077
GI number: 116690077
Start: 2281923
End: 2283332
Strand: Reverse
Name: gltX [H]
Synonym: Bcen2424_2056
Alternate gene names: 116690077
Gene position: 2283332-2281923 (Counterclockwise)
Preceding gene: 116690079
Following gene: 116690076
Centisome position: 65.54
GC content: 66.67
Gene sequence:
>1410_bases ATGACCCGTCCTGTCCGTACCCGCTTCGCGCCGAGTCCCACCGGCTTCATCCACCTCGGCAACATCCGCTCCGCACTCTA TCCGTGGGCGTTCGCCCGCAAGATGAAAGGCACGTTCGTGCTGCGCATCGAGGATACCGACGTCGAGCGCTCGTCGCAGG AAGCGGTCGATGCGATCCTCGAGGGGATGCAGTGGCTCGGACTGGATTTCGACGAAGGCCCGATCTACCAGATGCAGCGG ATGGACCGCTATCGCGAAGTGCTCGCGCAGATGCTCGAGAAGGGTCTCGCATATCCGTGCTACATGTCGGCCGAGGAACT CGACGCGCTGCGCGAACGCCAGCGCGAAGCCGGCCTGAAGCCGCGCTACGACGGTACGTGGCGCCCGGAGCCCGGCAAGG TGCTGCCGGAGCCGCCGGCCGGCGTGAAGCCGGTGCTGCGCTTCCGCAATCCGCTGACGGGCACGGTCGTGTGGGACGAT GCGGTGAAGGGGCGTGTCGAGATCTCGAACGAGGAGCTCGACGACCTCGTGATCGCGCGCCCGGACGGCACGCCGATCTA CAACTTCTGCGTGGTGGTGGACGACATGGACATGGGCATCACGCACGTGATCCGCGGTGACGACCACGTGAACAACACGC CGCGCCAGATCAACATCCTGAACGCACTCGGCGGCGAGCCGCCCGTCTATGCGCACTTGCCGACCGTGCTGAACGAGCAG GGCGAGAAGATGAGCAAGCGGCATGGCGCGATGAGCGTGATGGCGTACCGCGACGCGGGCTTCCTGCCGGAAGCCGTCGT CAACTATCTCGCGCGTCTCGGCTGGTCGCACGGCGACGCCGAGATCTTCTCGCGCGAGCAGTTCGTCGAATGGTTCGATC TCGAGCATCTCGGCAAGTCGCCCGCGCAGTACGACCACAGCAAGCTGAGCTGGCTGAACGCGCATTACATCAAGGAAGCC GACAACGCGCGCCTTGCCGAACTCGCGAAGCCGTTCCTCGACGCACTCGGCATCGACGACGCGGCGATCGCGACGGGCCC CGCGCTCGACGCGGTGGTCGGCTTGATGAAGGATCGTGCGACGACGGTCAAGGAGATCGCGGAAGGTGCGGCGATGTTCT ATCGTGTGCCGGCACCCGACGCCGACGCGCTCGCGCAGCACGTGACCGATGCGGTGCGTCCGGCGCTGGCCGATCTCGCG GCCGCGCTGAAGGCGGCCGACTGGACGAAGGAAGCGGTTTCCGCCGCGCTGAAGGCGACGCTCGCCACGCACAAGCTGAA GATGCCGCAGCTCGCGATGCCGGTGCGTCTGCTGGTGGCGGGCACGACGCATACGCCGTCGATCGACGCGGTGCTCGTGC TGTTCGGTCGCGACGTCGTGGTGACGCGCATCGAGGCCGCGCTGGCTTGA
Upstream 100 bases:
>100_bases TCTTTCCCGTTCCGGGCGCCGCCGGCTCCGTTGCTGTCCGGGCTGCCGCGTCGTCCCGCGTCGAATCATTCATGCGCCCC AGGCGTTCGAGTTACCGTTT
Downstream 100 bases:
>100_bases CGTTCGTGCGCGCGCGAAGCTGTCCGTGCATGAGGTACGCGGCGGCTTCGCAAAAAATTTCGCACGAATCGTAAAAAGGG TATTTACAAGTTCGAAATCG
Product: glutamyl-tRNA synthetase
Products: NA
Alternate protein names: Glutamate--tRNA ligase; GluRS [H]
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MTRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMQWLGLDFDEGPIYQMQR MDRYREVLAQMLEKGLAYPCYMSAEELDALRERQREAGLKPRYDGTWRPEPGKVLPEPPAGVKPVLRFRNPLTGTVVWDD AVKGRVEISNEELDDLVIARPDGTPIYNFCVVVDDMDMGITHVIRGDDHVNNTPRQINILNALGGEPPVYAHLPTVLNEQ GEKMSKRHGAMSVMAYRDAGFLPEAVVNYLARLGWSHGDAEIFSREQFVEWFDLEHLGKSPAQYDHSKLSWLNAHYIKEA DNARLAELAKPFLDALGIDDAAIATGPALDAVVGLMKDRATTVKEIAEGAAMFYRVPAPDADALAQHVTDAVRPALADLA AALKAADWTKEAVSAALKATLATHKLKMPQLAMPVRLLVAGTTHTPSIDAVLVLFGRDVVVTRIEAALA
Sequences:
>Translated_469_residues MTRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMQWLGLDFDEGPIYQMQR MDRYREVLAQMLEKGLAYPCYMSAEELDALRERQREAGLKPRYDGTWRPEPGKVLPEPPAGVKPVLRFRNPLTGTVVWDD AVKGRVEISNEELDDLVIARPDGTPIYNFCVVVDDMDMGITHVIRGDDHVNNTPRQINILNALGGEPPVYAHLPTVLNEQ GEKMSKRHGAMSVMAYRDAGFLPEAVVNYLARLGWSHGDAEIFSREQFVEWFDLEHLGKSPAQYDHSKLSWLNAHYIKEA DNARLAELAKPFLDALGIDDAAIATGPALDAVVGLMKDRATTVKEIAEGAAMFYRVPAPDADALAQHVTDAVRPALADLA AALKAADWTKEAVSAALKATLATHKLKMPQLAMPVRLLVAGTTHTPSIDAVLVLFGRDVVVTRIEAALA >Mature_468_residues TRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAILEGMQWLGLDFDEGPIYQMQRM DRYREVLAQMLEKGLAYPCYMSAEELDALRERQREAGLKPRYDGTWRPEPGKVLPEPPAGVKPVLRFRNPLTGTVVWDDA VKGRVEISNEELDDLVIARPDGTPIYNFCVVVDDMDMGITHVIRGDDHVNNTPRQINILNALGGEPPVYAHLPTVLNEQG EKMSKRHGAMSVMAYRDAGFLPEAVVNYLARLGWSHGDAEIFSREQFVEWFDLEHLGKSPAQYDHSKLSWLNAHYIKEAD NARLAELAKPFLDALGIDDAAIATGPALDAVVGLMKDRATTVKEIAEGAAMFYRVPAPDADALAQHVTDAVRPALADLAA ALKAADWTKEAVSAALKATLATHKLKMPQLAMPVRLLVAGTTHTPSIDAVLVLFGRDVVVTRIEAALA
Specific function: Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction:glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu) [H]
COG id: COG0008
COG function: function code J; Glutamyl- and glutaminyl-tRNA synthetases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI134288884, Length=330, Percent_Identity=36.0606060606061, Blast_Score=201, Evalue=1e-51, Organism=Escherichia coli, GI1788743, Length=466, Percent_Identity=49.7854077253219, Blast_Score=462, Evalue=1e-131, Organism=Escherichia coli, GI226510925, Length=245, Percent_Identity=37.1428571428571, Blast_Score=144, Evalue=2e-35, Organism=Escherichia coli, GI1786895, Length=207, Percent_Identity=25.6038647342995, Blast_Score=68, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71993394, Length=480, Percent_Identity=29.1666666666667, Blast_Score=184, Evalue=6e-47, Organism=Caenorhabditis elegans, GI17543332, Length=130, Percent_Identity=30, Blast_Score=68, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6324540, Length=420, Percent_Identity=32.3809523809524, Blast_Score=220, Evalue=4e-58, Organism=Saccharomyces cerevisiae, GI6321192, Length=233, Percent_Identity=26.6094420600858, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6324742, Length=123, Percent_Identity=32.520325203252, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24665321, Length=493, Percent_Identity=30.0202839756592, Blast_Score=219, Evalue=3e-57, Organism=Drosophila melanogaster, GI17864488, Length=302, Percent_Identity=24.5033112582781, Blast_Score=72, Evalue=1e-12,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008925 - InterPro: IPR020751 - InterPro: IPR001412 - InterPro: IPR004527 - InterPro: IPR000924 - InterPro: IPR020061 - InterPro: IPR020058 - InterPro: IPR014729 [H]
Pfam domain/function: PF00749 tRNA-synt_1c [H]
EC number: =6.1.1.17 [H]
Molecular weight: Translated: 51839; Mature: 51708
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAIL CCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHH EGMQWLGLDFDEGPIYQMQRMDRYREVLAQMLEKGLAYPCYMSAEELDALRERQREAGLK HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC PRYDGTWRPEPGKVLPEPPAGVKPVLRFRNPLTGTVVWDDAVKGRVEISNEELDDLVIAR CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCEEEEC PDGTPIYNFCVVVDDMDMGITHVIRGDDHVNNTPRQINILNALGGEPPVYAHLPTVLNEQ CCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEHHHCCCCCCEEEECCHHHHHH GEKMSKRHGAMSVMAYRDAGFLPEAVVNYLARLGWSHGDAEIFSREQFVEWFDLEHLGKS HHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC PAQYDHSKLSWLNAHYIKEADNARLAELAKPFLDALGIDDAAIATGPALDAVVGLMKDRA CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH TTVKEIAEGAAMFYRVPAPDADALAQHVTDAVRPALADLAAALKAADWTKEAVSAALKAT HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LATHKLKMPQLAMPVRLLVAGTTHTPSIDAVLVLFGRDVVVTRIEAALA HHHHHCCCCCHHCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHCC >Mature Secondary Structure TRPVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDTDVERSSQEAVDAIL CCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHH EGMQWLGLDFDEGPIYQMQRMDRYREVLAQMLEKGLAYPCYMSAEELDALRERQREAGLK HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC PRYDGTWRPEPGKVLPEPPAGVKPVLRFRNPLTGTVVWDDAVKGRVEISNEELDDLVIAR CCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCEEEEC PDGTPIYNFCVVVDDMDMGITHVIRGDDHVNNTPRQINILNALGGEPPVYAHLPTVLNEQ CCCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEHHHCCCCCCEEEECCHHHHHH GEKMSKRHGAMSVMAYRDAGFLPEAVVNYLARLGWSHGDAEIFSREQFVEWFDLEHLGKS HHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC PAQYDHSKLSWLNAHYIKEADNARLAELAKPFLDALGIDDAAIATGPALDAVVGLMKDRA CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH TTVKEIAEGAAMFYRVPAPDADALAQHVTDAVRPALADLAAALKAADWTKEAVSAALKAT HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LATHKLKMPQLAMPVRLLVAGTTHTPSIDAVLVLFGRDVVVTRIEAALA HHHHHCCCCCHHCCEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA