| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is glnD [H]
Identifier: 116690042
GI number: 116690042
Start: 2237606
End: 2240182
Strand: Direct
Name: glnD [H]
Synonym: Bcen2424_2021
Alternate gene names: 116690042
Gene position: 2237606-2240182 (Clockwise)
Preceding gene: 116690041
Following gene: 116690043
Centisome position: 64.23
GC content: 67.48
Gene sequence:
>2577_bases ATGAGCGCTCACGCTGCCCCCTCGCCCGAAGCGCTGTCGCGGCGCGCCGAATTCAAGGCCGCCAAGACGGAGATGCTGGA GCGCTTTCGTCACGCGGCGAACGTCGCGTCGCTGATGCACGCGCTGTCGAAACTCACCGACGATGCATTGAAGCGCGTGT GGGACGAATGCGGACTGCCCGCGACGCTCGCGCTCGTCGCCGTCGGCGGCTACGGGCGCGGCGAGCTCGCGCCCTATTCC GACGTCGACATCCTCGTGCTGCTACCGGATGCGCACGACGCGGCGCTCGACGCGCGCATCGAGCGGTTCATCGGGATGGC GTGGGATCTCGGCCTCGAGATCGGCAGCAGCGTGCGCACGGTCGCGCAGTGCATCGAGGAGGCGTCGCAGGACGTCACGG TGCAGACCTCGCTGCTGGAAGCGCGCCGCATCGTCGGCAGCACCGCGCTGTTCGAGCGCTTCACCGTGCGCTACCACGAA GCGCTCGACGCCCGCGCGTTCTTCACAGCGAAAGTGCTCGAGATGCGCCAGCGCCACGCGAAGTTCCAGGACACGCCGTA CAGCCTCGAACCGAACGTGAAGGAAAGCCCCGGCGGGCTGCGCGACCTGCAGACGATCCTGTGGATTGCGCGCGCCGCCG GCTTCGGCAGCAGCTGGCGCGAGCTCGACACGCGCGGCCTCATCACCGACCGCGAAGCGCGCGAGCTGCGCCGCAACGAA GGCTTCCTGAAGACGCTGCGCGCGCGGCTGCACGTGATCGCCGGGCGCCGCCAGGACATGCTCGTGTTCGACCTGCAGAC GCAGGCCGCCGAGAGCTTCGGCTATCAGCCGACGCAGGCCAAGCGCGCGAGCGAGCAACTGATGCGCCGCTACTACTGGG CCGCGAAAGCCGTCACGCAGCTCGCGACGATCCTGATCCAGAACATCGAGGCGCAGTTGTTCCCCGCGACGAGCGGCATC ACGCGCGTGCTGTCGGCCGATCGCTTCGTCGAGAAACAGGGGATGCTCGAGATCGTCGACGACGGCGTGTTCGAGCGCCA TCCCGACGCGATCCTCGAAGCGTTCCTGCTGTATGAGACGACCCGCGGCGTGAAGGGCCTGTCCGCCCGCACGCTGCGCG CGCTGTACAACTCGCGCGAGATCATGAACAACGCGTGGCGCCGCGATCCGCAGAACCGCGCCACGTTCATGCGGATCCTG CAGCAGCCCGAAGGCATCACGCACGCATTCCGGCTGATGAACCAGACGAGCGTGCTCGGCCGCTATCTGCTGAATTTCCG CCGTATCGTCGGCCAGATGCAGCACGACCTGTACCACGTGTACACGGTCGACCAGCACATCCTGATGGTGCTGCGCAACA TCCGCCGCTTCGCGGTGGCCGAGCATGCGCACGAATACCCGTTCTGCAGCCAGCTGATCGGCAACTTCGAGCGCCCGTGG GTGCTGTACGTCGCGGCGCTGTTCCACGACATCGCGAAGGGCCGCGGCGGCGATCACTCGACGCTCGGGATGGCCGACGC GCGACGCTTCTGCCGTGAGCACGGCATCGCCGGCGACGACGCGGCGCTGATCGTGTGGCTCGTCCAGCATCACCTGACGA TGAGCCAGGTCGCGCAGAAACAGGACACGAGCGACCCCGAGGTCATCAAGCGCTTCGCCGAGGTGGTCGGTAACGAACGC TACCTCACCGCCCTCTACCTGCTGACCGTCGCCGATATCCGCGGCACGAGCCCGAAGGTGTGGAACACGTGGAAGGGCAA GCTGCTCGAGGATCTGTACCGCATCACGCTCGCGGTGCTCGGCGGCGCGAACCCCGACGCGCATTCGGAGCTGAAGTCGC GACAGGAGCAGGCGCTCGCGCTGCTGCGCCTGGAAACCGTGCCCGACGACGCGCACCGCGCGCTGTGGGATCAGCTCGAC GTCGGCTTCTTCCTGCGTCACGACGCGGCCGATATCGCGTGGCAGACGCGCGTGCTGTACCGGCACGTGAACGCCGAAAC CGCGATCGTCCGCGCGCGCCCGTCGCCGATCGGCGACGCGCTGCAGGTGCTCGTGTACGTGAAGGATCGCCCCGACCTGT TCGCGGGCATCTGCGCGTATTTCGACCGCAACGGGCTGTCGGTGCTCGATGCGCGCGTCAGCACGACGCGGCACGGCTAC GCGCTCGACAACTTCATCGTCACGCAGACCGAACGCGACGTGCGTTACCGCGACATCGCGAATCTCGTCGAGCAGCAGCT CGCGACGCGGCTCGCCGAAACCGCATCGCTGCCGGAACCGTCGAAGGGCCGCCTGTCGAGGCTGTCCCGGACGTTTCCGA TCACGCCGCGCGTCGACCTGCGGGCCGACGAGCGTGGTCAGTACTACATCCTGTCCGTGTCCGCCAACGACCGGCCGGGC CTTCTCTATTCGATCGCGCGCGTACTCGCCGAACATCGGATCGGCGTCCATGCGGCGCGGATCAATACGCTCGGCGAGCG CGTCGAAGACATCTTCCTGCTCGCGGGCGCCGGCCTGTCCGACAACCGCCTGCAGATCCAGCTCGAAACCGAATTGCTGC GTGCGATCGCAGTCTGA
Upstream 100 bases:
>100_bases TCGGCCGGCACGCCGGCGCGCCCCGTGTTCGCGCAATCGGCCGCCGCCGTCTGAGCGCCGTCGCGCCAGCCCGCCCCACC CCGCACCTGAACGGCCGCCC
Downstream 100 bases:
>100_bases ATGAATCCCAGCGTTTATGCGCACCAAATTAACCGTCAAGAATCCGAAGCCGGCGTCGCCGACTCGCGCCCCTGTCCGCT CCGGCAGCCTCGTCGCCCGC
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 858; Mature: 857
Protein sequence:
>858_residues MSAHAAPSPEALSRRAEFKAAKTEMLERFRHAANVASLMHALSKLTDDALKRVWDECGLPATLALVAVGGYGRGELAPYS DVDILVLLPDAHDAALDARIERFIGMAWDLGLEIGSSVRTVAQCIEEASQDVTVQTSLLEARRIVGSTALFERFTVRYHE ALDARAFFTAKVLEMRQRHAKFQDTPYSLEPNVKESPGGLRDLQTILWIARAAGFGSSWRELDTRGLITDREARELRRNE GFLKTLRARLHVIAGRRQDMLVFDLQTQAAESFGYQPTQAKRASEQLMRRYYWAAKAVTQLATILIQNIEAQLFPATSGI TRVLSADRFVEKQGMLEIVDDGVFERHPDAILEAFLLYETTRGVKGLSARTLRALYNSREIMNNAWRRDPQNRATFMRIL QQPEGITHAFRLMNQTSVLGRYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNIRRFAVAEHAHEYPFCSQLIGNFERPW VLYVAALFHDIAKGRGGDHSTLGMADARRFCREHGIAGDDAALIVWLVQHHLTMSQVAQKQDTSDPEVIKRFAEVVGNER YLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRITLAVLGGANPDAHSELKSRQEQALALLRLETVPDDAHRALWDQLD VGFFLRHDAADIAWQTRVLYRHVNAETAIVRARPSPIGDALQVLVYVKDRPDLFAGICAYFDRNGLSVLDARVSTTRHGY ALDNFIVTQTERDVRYRDIANLVEQQLATRLAETASLPEPSKGRLSRLSRTFPITPRVDLRADERGQYYILSVSANDRPG LLYSIARVLAEHRIGVHAARINTLGERVEDIFLLAGAGLSDNRLQIQLETELLRAIAV
Sequences:
>Translated_858_residues MSAHAAPSPEALSRRAEFKAAKTEMLERFRHAANVASLMHALSKLTDDALKRVWDECGLPATLALVAVGGYGRGELAPYS DVDILVLLPDAHDAALDARIERFIGMAWDLGLEIGSSVRTVAQCIEEASQDVTVQTSLLEARRIVGSTALFERFTVRYHE ALDARAFFTAKVLEMRQRHAKFQDTPYSLEPNVKESPGGLRDLQTILWIARAAGFGSSWRELDTRGLITDREARELRRNE GFLKTLRARLHVIAGRRQDMLVFDLQTQAAESFGYQPTQAKRASEQLMRRYYWAAKAVTQLATILIQNIEAQLFPATSGI TRVLSADRFVEKQGMLEIVDDGVFERHPDAILEAFLLYETTRGVKGLSARTLRALYNSREIMNNAWRRDPQNRATFMRIL QQPEGITHAFRLMNQTSVLGRYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNIRRFAVAEHAHEYPFCSQLIGNFERPW VLYVAALFHDIAKGRGGDHSTLGMADARRFCREHGIAGDDAALIVWLVQHHLTMSQVAQKQDTSDPEVIKRFAEVVGNER YLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRITLAVLGGANPDAHSELKSRQEQALALLRLETVPDDAHRALWDQLD VGFFLRHDAADIAWQTRVLYRHVNAETAIVRARPSPIGDALQVLVYVKDRPDLFAGICAYFDRNGLSVLDARVSTTRHGY ALDNFIVTQTERDVRYRDIANLVEQQLATRLAETASLPEPSKGRLSRLSRTFPITPRVDLRADERGQYYILSVSANDRPG LLYSIARVLAEHRIGVHAARINTLGERVEDIFLLAGAGLSDNRLQIQLETELLRAIAV >Mature_857_residues SAHAAPSPEALSRRAEFKAAKTEMLERFRHAANVASLMHALSKLTDDALKRVWDECGLPATLALVAVGGYGRGELAPYSD VDILVLLPDAHDAALDARIERFIGMAWDLGLEIGSSVRTVAQCIEEASQDVTVQTSLLEARRIVGSTALFERFTVRYHEA LDARAFFTAKVLEMRQRHAKFQDTPYSLEPNVKESPGGLRDLQTILWIARAAGFGSSWRELDTRGLITDREARELRRNEG FLKTLRARLHVIAGRRQDMLVFDLQTQAAESFGYQPTQAKRASEQLMRRYYWAAKAVTQLATILIQNIEAQLFPATSGIT RVLSADRFVEKQGMLEIVDDGVFERHPDAILEAFLLYETTRGVKGLSARTLRALYNSREIMNNAWRRDPQNRATFMRILQ QPEGITHAFRLMNQTSVLGRYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNIRRFAVAEHAHEYPFCSQLIGNFERPWV LYVAALFHDIAKGRGGDHSTLGMADARRFCREHGIAGDDAALIVWLVQHHLTMSQVAQKQDTSDPEVIKRFAEVVGNERY LTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRITLAVLGGANPDAHSELKSRQEQALALLRLETVPDDAHRALWDQLDV GFFLRHDAADIAWQTRVLYRHVNAETAIVRARPSPIGDALQVLVYVKDRPDLFAGICAYFDRNGLSVLDARVSTTRHGYA LDNFIVTQTERDVRYRDIANLVEQQLATRLAETASLPEPSKGRLSRLSRTFPITPRVDLRADERGQYYILSVSANDRPGL LYSIARVLAEHRIGVHAARINTLGERVEDIFLLAGAGLSDNRLQIQLETELLRAIAV
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=841, Percent_Identity=36.1474435196195, Blast_Score=517, Evalue=1e-147,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 96897; Mature: 96766
Theoretical pI: Translated: 8.43; Mature: 8.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAHAAPSPEALSRRAEFKAAKTEMLERFRHAANVASLMHALSKLTDDALKRVWDECGLP CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ATLALVAVGGYGRGELAPYSDVDILVLLPDAHDAALDARIERFIGMAWDLGLEIGSSVRT HHHHHHEECCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH VAQCIEEASQDVTVQTSLLEARRIVGSTALFERFTVRYHEALDARAFFTAKVLEMRQRHA HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KFQDTPYSLEPNVKESPGGLRDLQTILWIARAAGFGSSWRELDTRGLITDREARELRRNE CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHCC GFLKTLRARLHVIAGRRQDMLVFDLQTQAAESFGYQPTQAKRASEQLMRRYYWAAKAVTQ HHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH LATILIQNIEAQLFPATSGITRVLSADRFVEKQGMLEIVDDGVFERHPDAILEAFLLYET HHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHHHHH TRGVKGLSARTLRALYNSREIMNNAWRRDPQNRATFMRILQQPEGITHAFRLMNQTSVLG HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNIRRFAVAEHAHEYPFCSQLIGNFERPW HHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHH VLYVAALFHDIAKGRGGDHSTLGMADARRFCREHGIAGDDAALIVWLVQHHLTMSQVAQK HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH QDTSDPEVIKRFAEVVGNERYLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRITLAVL CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH GGANPDAHSELKSRQEQALALLRLETVPDDAHRALWDQLDVGFFLRHDAADIAWQTRVLY CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHH RHVNAETAIVRARPSPIGDALQVLVYVKDRPDLFAGICAYFDRNGLSVLDARVSTTRHGY HHCCCCEEEEEECCCCHHHHHHHHEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCC ALDNFIVTQTERDVRYRDIANLVEQQLATRLAETASLPEPSKGRLSRLSRTFPITPRVDL CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCC RADERGQYYILSVSANDRPGLLYSIARVLAEHRIGVHAARINTLGERVEDIFLLAGAGLS CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCC DNRLQIQLETELLRAIAV CCEEEEEEHHHHHHHHCC >Mature Secondary Structure SAHAAPSPEALSRRAEFKAAKTEMLERFRHAANVASLMHALSKLTDDALKRVWDECGLP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC ATLALVAVGGYGRGELAPYSDVDILVLLPDAHDAALDARIERFIGMAWDLGLEIGSSVRT HHHHHHEECCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHH VAQCIEEASQDVTVQTSLLEARRIVGSTALFERFTVRYHEALDARAFFTAKVLEMRQRHA HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KFQDTPYSLEPNVKESPGGLRDLQTILWIARAAGFGSSWRELDTRGLITDREARELRRNE CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHCC GFLKTLRARLHVIAGRRQDMLVFDLQTQAAESFGYQPTQAKRASEQLMRRYYWAAKAVTQ HHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH LATILIQNIEAQLFPATSGITRVLSADRFVEKQGMLEIVDDGVFERHPDAILEAFLLYET HHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHCCCHHHHHCCCHHCCHHHHHHHHHHHHH TRGVKGLSARTLRALYNSREIMNNAWRRDPQNRATFMRILQQPEGITHAFRLMNQTSVLG HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RYLLNFRRIVGQMQHDLYHVYTVDQHILMVLRNIRRFAVAEHAHEYPFCSQLIGNFERPW HHHHHHHHHHHHHHHHHEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHH VLYVAALFHDIAKGRGGDHSTLGMADARRFCREHGIAGDDAALIVWLVQHHLTMSQVAQK HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH QDTSDPEVIKRFAEVVGNERYLTALYLLTVADIRGTSPKVWNTWKGKLLEDLYRITLAVL CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH GGANPDAHSELKSRQEQALALLRLETVPDDAHRALWDQLDVGFFLRHDAADIAWQTRVLY CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEECCCHHHHHHHHHHH RHVNAETAIVRARPSPIGDALQVLVYVKDRPDLFAGICAYFDRNGLSVLDARVSTTRHGY HHCCCCEEEEEECCCCHHHHHHHHEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCCC ALDNFIVTQTERDVRYRDIANLVEQQLATRLAETASLPEPSKGRLSRLSRTFPITPRVDL CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCC RADERGQYYILSVSANDRPGLLYSIARVLAEHRIGVHAARINTLGERVEDIFLLAGAGLS CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEECCCCC DNRLQIQLETELLRAIAV CCEEEEEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA