| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689980
Identifier: 116689980
GI number: 116689980
Start: 2178367
End: 2178777
Strand: Reverse
Name: 116689980
Synonym: Bcen2424_1959
Alternate gene names: NA
Gene position: 2178777-2178367 (Counterclockwise)
Preceding gene: 116689981
Following gene: 116689977
Centisome position: 62.54
GC content: 69.34
Gene sequence:
>411_bases ATGAGCCAGCCTGAAAACGACCTCGCGGTCCTGCTGCGCACGATGCGGCCCGAACTGCATCCGGGCGCGTTCGCGTTCAT CTCGCTGCCGCACGGCGCCGACGTATCGGTATCCGAAGTGATCGCGACGTTCCGCGAAGCGGAAGGGCTGACGGTCGTGG TCGACGAGGAGGCGGCCGCGCGTCGTGGCTGGCCGGTGCTGTTTCGCGCCGCCTGGATCACGCTGACCGTGCATTCCGAC CTCGCGGCCGTCGGCCTCACGGCCGCATTCGCGCGGGCGCTCGGCGCGGCCGGTATCAGCTGCAACGTGATGGCCGCCGC GTACCACGATCACATTTTCGTGCCGTTCGACGACGGCCCGCGCGCACGCGACGTACTCGTCGCACTGCAGCGCGACACGA TGCGCGCGTAG
Upstream 100 bases:
>100_bases TTGCCACGGCTCGAATAGCGGCACCAGTTCGCCGCTGTCGCGCGTGCTATCGTGCCCGCATCGCCACCATACGACGTCCG GTTCCGGGCGCGATCCTCCG
Downstream 100 bases:
>100_bases CCCGCGAAGGGCATGCCGCGCAGGCAAAAAAACGGGCCCGTGTGACCGGGCCCGCGAACGGAGAGAATGACGCCGGCGAA TGACTTCCGGCGCCTGACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MSQPENDLAVLLRTMRPELHPGAFAFISLPHGADVSVSEVIATFREAEGLTVVVDEEAAARRGWPVLFRAAWITLTVHSD LAAVGLTAAFARALGAAGISCNVMAAAYHDHIFVPFDDGPRARDVLVALQRDTMRA
Sequences:
>Translated_136_residues MSQPENDLAVLLRTMRPELHPGAFAFISLPHGADVSVSEVIATFREAEGLTVVVDEEAAARRGWPVLFRAAWITLTVHSD LAAVGLTAAFARALGAAGISCNVMAAAYHDHIFVPFDDGPRARDVLVALQRDTMRA >Mature_135_residues SQPENDLAVLLRTMRPELHPGAFAFISLPHGADVSVSEVIATFREAEGLTVVVDEEAAARRGWPVLFRAAWITLTVHSDL AAVGLTAAFARALGAAGISCNVMAAAYHDHIFVPFDDGPRARDVLVALQRDTMRA
Specific function: Unknown
COG id: COG3602
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14608; Mature: 14477
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPENDLAVLLRTMRPELHPGAFAFISLPHGADVSVSEVIATFREAEGLTVVVDEEAAA CCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCHHH RRGWPVLFRAAWITLTVHSDLAAVGLTAAFARALGAAGISCNVMAAAYHDHIFVPFDDGP HCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECCCC RARDVLVALQRDTMRA CHHHHHEEEHHHCCCC >Mature Secondary Structure SQPENDLAVLLRTMRPELHPGAFAFISLPHGADVSVSEVIATFREAEGLTVVVDEEAAA CCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCHHH RRGWPVLFRAAWITLTVHSDLAAVGLTAAFARALGAAGISCNVMAAAYHDHIFVPFDDGP HCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECCCC RARDVLVALQRDTMRA CHHHHHEEEHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA