| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is lon [H]
Identifier: 116689942
GI number: 116689942
Start: 2134336
End: 2136759
Strand: Reverse
Name: lon [H]
Synonym: Bcen2424_1921
Alternate gene names: 116689942
Gene position: 2136759-2134336 (Counterclockwise)
Preceding gene: 116689943
Following gene: 116689941
Centisome position: 61.33
GC content: 63.08
Gene sequence:
>2424_bases ATGTCAGGCACCCAACTTCTCCCGCCGGAACGCATCACGCTCCCGCTGCTGCCGCTGCGGGACGTCGTCGTTTTCCCGCA CATGGTCATTCCGCTCTTCGTGGGCCGGCCGAAATCGATCAAGGCCCTCGAAGCAGCGATGGAAGGCGGCAAGCACATCA TGCTCGTCGCCCAGAAAACCGCGGCCAAGGACGAACCGACCGAAAAGGACATGTACGAGGTCGGTTGTATCGCCAACATT CTGCAGATGCTGAAGCTGCCGGACGGCACCGTGAAGGTGCTCGTCGAGGGCCTGCAGCGCGCGAAGGCATTGTCCATCGA AGAACAGGAGACGCAGTTCTCCTGCGAAGTGATGCCGCTCGAGCCCGATCATGCGGATAGCGCCGAAACGGAAGCGCTGC GCCGTGCGATCGTGTCGCAGTTCGACCAGTACGTGAAGCTGAACAAGAAGATCCCGCCGGAAATTCTTACGTCGCTGTCG GGCATCGATGAAGCAGGCCGTCTCGCCGACATGATCGCCGAGCGCCTGCCGCTGAAGCTCGACCAGAAGCAGCACATCCT CGAGATGTTCCCGGTCATCGAGCGCCTCGAGCACCTGCTCGCGCAGCTCGAAGCCGAGATCGACATCCTGCAGGTCGAAA AGCGCATCCGCGGGCGCGTGAAGCGCCAGATGGAAAAGAGCCAGCGCGAGTACTACCTGAACGAACAGGTCAAGGCGATC CAGAAGGAACTGGGCGAAGGCGAGGAGGGTGCGGATCTCGAGGAACTCGAGAAGCGCATCAACGCCGCGCGCATGCCGAA GGAAGCCAAGAAGAAGGCCGACGCCGAGCTGAAGAAGCTGAAGCTGATGTCGCCGATGTCGGCGGAAGCGACCGTCGTGC GCAACTACATCGACACGCTGATCGGCCTGCCGTGGCGCAAGAAGAGCAAGGTCAACAACGACCTGTCGAACGCCGAGCAG GTGCTCGACGAGGATCACTTCGGCCTCGAGAAGGTCAAGGAACGGATCCTCGAGTATCTCGCGGTGCAACAGCGCGTGGA CAAGGTCAAGGCGCCGATCCTGTGCCTCGTCGGGCCTCCGGGTGTCGGCAAGACCTCGCTCGGCCAGTCGATCGCCCGTG CGACGAACCGCAAGTTCGTCCGCATGGCGCTCGGCGGCGTGCGTGACGAAGCCGAGATCCGCGGTCACCGCCGTACGTAC ATCGGTTCGATGCCGGGCAAGATCCTGCAAAGCCTCGCGAAGGTCGGCGTGCGCAATCCGCTCTTCCTGCTCGACGAAGT CGACAAGATGGGCATGGATTTCCGCGGCGATCCGTCGTCGGCGCTGCTCGAAGTGCTCGATCCGGAACAGAACCACACGT TCGCCGACCACTACATCGAAGTCGACTTCGACCTGTCGGACGTGATGTTCGTCGCGACGTCGAACTCGCTGAACATCCCG CCGCCGCTGCTCGACCGGATGGAAGTGATCCGTCTGTCGGGCTACACGGAAGACGAGAAGGTCAGCATTGCCCAGCGTTA CCTGCTGCCGAAGCAGAAGAAGAACAACGGGCTGAAGGACGGCGAGATCGAGGTCACCGAGCAGGCGATCCGCGACATCA TCCGCTACTACACGCGCGAAGCCGGTGTGCGTTCGCTCGAGCGGGAAGTGTCGAAGATCTGCCGCAAGGTCGTGAAGATG CTGCTGTTGAAGAAGGCATCGGGCGCGATCAAGGTCGATGGCGAGAACCTCGACACGTTCCTCGGCGTGCGCAAGTACGA CTTCGGCCTCGCGGCGAAGGAAAACCAGGTCGGTCAGGTGACGGGCCTCGCGTGGACGGAAGTCGGCGGCGACCTGCTGA CGATCGAAGCCGCGGTGATGCCAGGCAAGGGCAACGTGATCCGTACGGGTTCGCTCGGCGACGTGATGAAGGAGTCGGTC GAGGCTGCGCGTTCGGTCGTGCGCTCGCGTTCGCGTCGTCTCGGCATCAAGGACGAAGCGTTCGAGAAGCAGGACATCCA CATCCACGTGCCGGAAGGCGCGACGCCGAAGGACGGTCCGTCCGCCGGCGGTGCGATGACGACCGCGCTGGTGTCGGTGC TGACGGGTATTCCCGTGCGGGCCGACGTCGCGATGACGGGCGAAATCACGTTGCGTGGCGAAGTGCTGCCGATCGGCGGG CTGAAGGAAAAGCTGCTGGCTGCGCATCGCGGCGGCATCAAGCTCGTGCTGATTCCGGAAGAGAACGTGAAGGATCTCGC GGACATTCCGGACAACGTGAAGAACGCGATCGAGATCGTGCCGGTCCGCTGGATCGACAAGGTGCTGGAGCTCGCGCTCG AGCGTTCGCCGACGCCGCTGCCGCCGGAAGAAGAAGCGAAGGCTGCGGCGCCGGTCGGTGAGGCGGCGAAGGATGCCGGC TCGACGGAAGTCGTCAAGCACTGA
Upstream 100 bases:
>100_bases TGGTTACTTTCTTACCGAATATTTCCCGCACTTGAAGGCTTGCAATTCGTTGTGGCGGCCTCAATTACCGAACAATTGAT TCCACTCATGGGGAAATGAA
Downstream 100 bases:
>100_bases CCCTGAGCACCGTCGTTGCTGACGGTCGTTCACGAAACCCGCGGCGATGTCCGCGGGTTTTTTTTATGCGCAGCACAATC GTGCGAGCGCGTGGGTTAAA
Product: ATP-dependent protease La
Products: NA
Alternate protein names: ATP-dependent protease La [H]
Number of amino acids: Translated: 807; Mature: 806
Protein sequence:
>807_residues MSGTQLLPPERITLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEGGKHIMLVAQKTAAKDEPTEKDMYEVGCIANI LQMLKLPDGTVKVLVEGLQRAKALSIEEQETQFSCEVMPLEPDHADSAETEALRRAIVSQFDQYVKLNKKIPPEILTSLS GIDEAGRLADMIAERLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAI QKELGEGEEGADLEELEKRINAARMPKEAKKKADAELKKLKLMSPMSAEATVVRNYIDTLIGLPWRKKSKVNNDLSNAEQ VLDEDHFGLEKVKERILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTY IGSMPGKILQSLAKVGVRNPLFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYIEVDFDLSDVMFVATSNSLNIP PPLLDRMEVIRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEIEVTEQAIRDIIRYYTREAGVRSLEREVSKICRKVVKM LLLKKASGAIKVDGENLDTFLGVRKYDFGLAAKENQVGQVTGLAWTEVGGDLLTIEAAVMPGKGNVIRTGSLGDVMKESV EAARSVVRSRSRRLGIKDEAFEKQDIHIHVPEGATPKDGPSAGGAMTTALVSVLTGIPVRADVAMTGEITLRGEVLPIGG LKEKLLAAHRGGIKLVLIPEENVKDLADIPDNVKNAIEIVPVRWIDKVLELALERSPTPLPPEEEAKAAAPVGEAAKDAG STEVVKH
Sequences:
>Translated_807_residues MSGTQLLPPERITLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEGGKHIMLVAQKTAAKDEPTEKDMYEVGCIANI LQMLKLPDGTVKVLVEGLQRAKALSIEEQETQFSCEVMPLEPDHADSAETEALRRAIVSQFDQYVKLNKKIPPEILTSLS GIDEAGRLADMIAERLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAI QKELGEGEEGADLEELEKRINAARMPKEAKKKADAELKKLKLMSPMSAEATVVRNYIDTLIGLPWRKKSKVNNDLSNAEQ VLDEDHFGLEKVKERILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTY IGSMPGKILQSLAKVGVRNPLFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYIEVDFDLSDVMFVATSNSLNIP PPLLDRMEVIRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEIEVTEQAIRDIIRYYTREAGVRSLEREVSKICRKVVKM LLLKKASGAIKVDGENLDTFLGVRKYDFGLAAKENQVGQVTGLAWTEVGGDLLTIEAAVMPGKGNVIRTGSLGDVMKESV EAARSVVRSRSRRLGIKDEAFEKQDIHIHVPEGATPKDGPSAGGAMTTALVSVLTGIPVRADVAMTGEITLRGEVLPIGG LKEKLLAAHRGGIKLVLIPEENVKDLADIPDNVKNAIEIVPVRWIDKVLELALERSPTPLPPEEEAKAAAPVGEAAKDAG STEVVKH >Mature_806_residues SGTQLLPPERITLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEGGKHIMLVAQKTAAKDEPTEKDMYEVGCIANIL QMLKLPDGTVKVLVEGLQRAKALSIEEQETQFSCEVMPLEPDHADSAETEALRRAIVSQFDQYVKLNKKIPPEILTSLSG IDEAGRLADMIAERLPLKLDQKQHILEMFPVIERLEHLLAQLEAEIDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAIQ KELGEGEEGADLEELEKRINAARMPKEAKKKADAELKKLKLMSPMSAEATVVRNYIDTLIGLPWRKKSKVNNDLSNAEQV LDEDHFGLEKVKERILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYI GSMPGKILQSLAKVGVRNPLFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYIEVDFDLSDVMFVATSNSLNIPP PLLDRMEVIRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEIEVTEQAIRDIIRYYTREAGVRSLEREVSKICRKVVKML LLKKASGAIKVDGENLDTFLGVRKYDFGLAAKENQVGQVTGLAWTEVGGDLLTIEAAVMPGKGNVIRTGSLGDVMKESVE AARSVVRSRSRRLGIKDEAFEKQDIHIHVPEGATPKDGPSAGGAMTTALVSVLTGIPVRADVAMTGEITLRGEVLPIGGL KEKLLAAHRGGIKLVLIPEENVKDLADIPDNVKNAIEIVPVRWIDKVLELALERSPTPLPPEEEAKAAAPVGEAAKDAGS TEVVKH
Specific function: ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced
COG id: COG0466
COG function: function code O; ATP-dependent Lon protease, bacterial type
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Lon domain [H]
Homologues:
Organism=Homo sapiens, GI31377667, Length=568, Percent_Identity=46.4788732394366, Blast_Score=516, Evalue=1e-146, Organism=Homo sapiens, GI21396489, Length=684, Percent_Identity=40.4970760233918, Blast_Score=505, Evalue=1e-143, Organism=Escherichia coli, GI1786643, Length=770, Percent_Identity=69.8701298701299, Blast_Score=1079, Evalue=0.0, Organism=Caenorhabditis elegans, GI17505831, Length=692, Percent_Identity=39.5953757225434, Blast_Score=476, Evalue=1e-134, Organism=Caenorhabditis elegans, GI17556486, Length=540, Percent_Identity=41.4814814814815, Blast_Score=437, Evalue=1e-122, Organism=Saccharomyces cerevisiae, GI6319449, Length=720, Percent_Identity=40.2777777777778, Blast_Score=512, Evalue=1e-146, Organism=Drosophila melanogaster, GI221513036, Length=671, Percent_Identity=41.7287630402384, Blast_Score=511, Evalue=1e-144, Organism=Drosophila melanogaster, GI24666867, Length=671, Percent_Identity=41.7287630402384, Blast_Score=510, Evalue=1e-144,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR008269 - InterPro: IPR004815 - InterPro: IPR003111 - InterPro: IPR001984 - InterPro: IPR015947 - InterPro: IPR020568 [H]
Pfam domain/function: PF00004 AAA; PF02190 LON; PF05362 Lon_C [H]
EC number: =3.4.21.53 [H]
Molecular weight: Translated: 89266; Mature: 89135
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGTQLLPPERITLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEGGKHIMLVAQKT CCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEECC AAKDEPTEKDMYEVGCIANILQMLKLPDGTVKVLVEGLQRAKALSIEEQETQFSCEVMPL CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHCCCEEEEEEEC EPDHADSAETEALRRAIVSQFDQYVKLNKKIPPEILTSLSGIDEAGRLADMIAERLPLKL CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC DQKQHILEMFPVIERLEHLLAQLEAEIDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKELGEGEEGADLEELEKRINAARMPKEAKKKADAELKKLKLMSPMSAEATVVRNYIDTL HHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH IGLPWRKKSKVNNDLSNAEQVLDEDHFGLEKVKERILEYLAVQQRVDKVKAPILCLVGPP HCCCCCHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC GVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLAKVGVRNP CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCC LFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYIEVDFDLSDVMFVATSNSLNIP CHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEECCEEEEEECCCCEEEEEECCCCCCC PPLLDRMEVIRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEIEVTEQAIRDIIRYYTRE CHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHH AGVRSLEREVSKICRKVVKMLLLKKASGAIKVDGENLDTFLGVRKYDFGLAAKENQVGQV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCHHHCCCCCCCCCCCCCE TGLAWTEVGGDLLTIEAAVMPGKGNVIRTGSLGDVMKESVEAARSVVRSRSRRLGIKDEA ECEEHHHCCCCEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHC FEKQDIHIHVPEGATPKDGPSAGGAMTTALVSVLTGIPVRADVAMTGEITLRGEVLPIGG CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECEEEECEEEEECEEEECCC LKEKLLAAHRGGIKLVLIPEENVKDLADIPDNVKNAIEIVPVRWIDKVLELALERSPTPL HHHHHHHHHCCCEEEEEECCCCHHHHHCCCHHHHHHHEEECHHHHHHHHHHHHHCCCCCC PPEEEAKAAAPVGEAAKDAGSTEVVKH CCCHHHHHCCCCCHHHHCCCCCHHCCC >Mature Secondary Structure SGTQLLPPERITLPLLPLRDVVVFPHMVIPLFVGRPKSIKALEAAMEGGKHIMLVAQKT CCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCEEEEEEECC AAKDEPTEKDMYEVGCIANILQMLKLPDGTVKVLVEGLQRAKALSIEEQETQFSCEVMPL CCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHCCCEEEEEEEC EPDHADSAETEALRRAIVSQFDQYVKLNKKIPPEILTSLSGIDEAGRLADMIAERLPLKL CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCC DQKQHILEMFPVIERLEHLLAQLEAEIDILQVEKRIRGRVKRQMEKSQREYYLNEQVKAI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKELGEGEEGADLEELEKRINAARMPKEAKKKADAELKKLKLMSPMSAEATVVRNYIDTL HHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH IGLPWRKKSKVNNDLSNAEQVLDEDHFGLEKVKERILEYLAVQQRVDKVKAPILCLVGPP HCCCCCHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC GVGKTSLGQSIARATNRKFVRMALGGVRDEAEIRGHRRTYIGSMPGKILQSLAKVGVRNP CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHCCCCC LFLLDEVDKMGMDFRGDPSSALLEVLDPEQNHTFADHYIEVDFDLSDVMFVATSNSLNIP CHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCEEECCEEEEEECCCCEEEEEECCCCCCC PPLLDRMEVIRLSGYTEDEKVSIAQRYLLPKQKKNNGLKDGEIEVTEQAIRDIIRYYTRE CHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHH AGVRSLEREVSKICRKVVKMLLLKKASGAIKVDGENLDTFLGVRKYDFGLAAKENQVGQV HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHCCHHHCCCCCCCCCCCCCE TGLAWTEVGGDLLTIEAAVMPGKGNVIRTGSLGDVMKESVEAARSVVRSRSRRLGIKDEA ECEEHHHCCCCEEEEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHC FEKQDIHIHVPEGATPKDGPSAGGAMTTALVSVLTGIPVRADVAMTGEITLRGEVLPIGG CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECEEEECEEEEECEEEECCC LKEKLLAAHRGGIKLVLIPEENVKDLADIPDNVKNAIEIVPVRWIDKVLELALERSPTPL HHHHHHHHHCCCEEEEEECCCCHHHHHCCCHHHHHHHEEECHHHHHHHHHHHHHCCCCCC PPEEEAKAAAPVGEAAKDAGSTEVVKH CCCHHHHHCCCCCHHHHCCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8981986; 12620739 [H]