| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yceG [C]
Identifier: 116689915
GI number: 116689915
Start: 2098514
End: 2099533
Strand: Reverse
Name: yceG [C]
Synonym: Bcen2424_1894
Alternate gene names: 116689915
Gene position: 2099533-2098514 (Counterclockwise)
Preceding gene: 116689918
Following gene: 116689914
Centisome position: 60.26
GC content: 68.33
Gene sequence:
>1020_bases ATGTCCCTACTGAAGAAATGCGCCGCGACGATCGTGGCGCTGGCCGTCGTCGTGGCCGCTGCCGGCGCGGGCGGCGGGTA TTACTGGGCAACCCGGCCGCTGTTGCTGGGCTCGGCATCGCTCGACGTCACGATCAAGCCGCGCAGCAGCGTGAAGAGCG TCGCGCTGCAGCTCAAGCGCGGCGGCGTGCCGGTCGAGCCGTTCGCGTTCGTCGCGATGACGCGCGTGCTCGGGCTGTCG AGCCGGCTCAAGTCGGGCAACTACGAATTCAAGACCGGCATCACGCCGTACGACGTGCTGCAGAAGATCGCGCGCGGCGA CGTGAACGAGTACGTCGCGACGGTCATCGAGGGCTGGACCTTCAAGCGGATGCGCGCCGAGCTCGACGCGAACCCCGATC TGGCGCACGCGACGGCCGGCATGAGCGACGCCGAGCTGCTGCGCGCGATCGGCGCGTCGGACGGCGCCGTGCAGCGCGGC AGCGGCGAGGGGCTGTTCTTCCCCGATACCTACCTGTTCGACAAGGGCACGAGCGACCTGAACATCTACCGGCGCGCGTA CCGCCTGATGCAGACGCGCATCGACGAGGCCTGGGCCGCGCGCACGCCGGGGCTGCCGTACAAGACGCCTTACGAAATGC TGACGATCGCGTCGATCGTCGAGAAGGAAACCGGCCACGCGGCCGACCGCGCGTTCGTCGCGGCCGTGTTCGCGAACCGG CTGCGCATCGGCATGCCGCTGCAGACCGATCCGTCGGTGATCTACGGGCTCGGCGACGCGTACGACGGCCGGCTGCGCAA GCGCGACCTGCAGGCCGACACTCCTTACAATACCTACACCCGACGCGGGCTGCCGCCCACGCCGATCGCGTTGCCGGGTG TCGCCGCGCTGCAGGCGGCGATCAATCCGGCCCCGACGAGCGCGCTCTATTTCGTCGCGAAGGGCGACGGCACGAGCGTG TTCTCGGACACGCTCGGCGACCACAACAAGGCCGTGGATAAATACATACGAGGTCAATAA
Upstream 100 bases:
>100_bases GGTGAAGCGAACGGTGTGCTCATGGAATGAGGGAACAGTCAACCCTGACTTTGACGGAGGCGAGCAAGTATTATATGGGT CTTACCTGAGTCACGTTTCC
Downstream 100 bases:
>100_bases TGGCGAGCGGTAAATTCATCACGTTCGAAGGCATCGACGGGGCGGGGAAGACCACCCACCTGCAATGGTTCTGCGAACGT CTCCAGGGCCGGCTGGCGGC
Product: aminodeoxychorismate lyase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MSLLKKCAATIVALAVVVAAAGAGGGYYWATRPLLLGSASLDVTIKPRSSVKSVALQLKRGGVPVEPFAFVAMTRVLGLS SRLKSGNYEFKTGITPYDVLQKIARGDVNEYVATVIEGWTFKRMRAELDANPDLAHATAGMSDAELLRAIGASDGAVQRG SGEGLFFPDTYLFDKGTSDLNIYRRAYRLMQTRIDEAWAARTPGLPYKTPYEMLTIASIVEKETGHAADRAFVAAVFANR LRIGMPLQTDPSVIYGLGDAYDGRLRKRDLQADTPYNTYTRRGLPPTPIALPGVAALQAAINPAPTSALYFVAKGDGTSV FSDTLGDHNKAVDKYIRGQ
Sequences:
>Translated_339_residues MSLLKKCAATIVALAVVVAAAGAGGGYYWATRPLLLGSASLDVTIKPRSSVKSVALQLKRGGVPVEPFAFVAMTRVLGLS SRLKSGNYEFKTGITPYDVLQKIARGDVNEYVATVIEGWTFKRMRAELDANPDLAHATAGMSDAELLRAIGASDGAVQRG SGEGLFFPDTYLFDKGTSDLNIYRRAYRLMQTRIDEAWAARTPGLPYKTPYEMLTIASIVEKETGHAADRAFVAAVFANR LRIGMPLQTDPSVIYGLGDAYDGRLRKRDLQADTPYNTYTRRGLPPTPIALPGVAALQAAINPAPTSALYFVAKGDGTSV FSDTLGDHNKAVDKYIRGQ >Mature_338_residues SLLKKCAATIVALAVVVAAAGAGGGYYWATRPLLLGSASLDVTIKPRSSVKSVALQLKRGGVPVEPFAFVAMTRVLGLSS RLKSGNYEFKTGITPYDVLQKIARGDVNEYVATVIEGWTFKRMRAELDANPDLAHATAGMSDAELLRAIGASDGAVQRGS GEGLFFPDTYLFDKGTSDLNIYRRAYRLMQTRIDEAWAARTPGLPYKTPYEMLTIASIVEKETGHAADRAFVAAVFANRL RIGMPLQTDPSVIYGLGDAYDGRLRKRDLQADTPYNTYTRRGLPPTPIALPGVAALQAAINPAPTSALYFVAKGDGTSVF SDTLGDHNKAVDKYIRGQ
Specific function: Unknown
COG id: COG1559
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0755 family [H]
Homologues:
Organism=Escherichia coli, GI1787339, Length=322, Percent_Identity=37.888198757764, Blast_Score=211, Evalue=5e-56,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003770 [H]
Pfam domain/function: PF02618 ADC_lyase [H]
EC number: NA
Molecular weight: Translated: 36502; Mature: 36371
Theoretical pI: Translated: 9.73; Mature: 9.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLLKKCAATIVALAVVVAAAGAGGGYYWATRPLLLGSASLDVTIKPRSSVKSVALQLKR CHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCEEEEECCHHHHHHHHHHHHC GGVPVEPFAFVAMTRVLGLSSRLKSGNYEFKTGITPYDVLQKIARGDVNEYVATVIEGWT CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHCCCH FKRMRAELDANPDLAHATAGMSDAELLRAIGASDGAVQRGSGEGLFFPDTYLFDKGTSDL HHHHHHHCCCCCCHHHHHCCCCHHHHHHHHCCCCCCEECCCCCCEECCCCEEECCCCCHH NIYRRAYRLMQTRIDEAWAARTPGLPYKTPYEMLTIASIVEKETGHAADRAFVAAVFANR HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LRIGMPLQTDPSVIYGLGDAYDGRLRKRDLQADTPYNTYTRRGLPPTPIALPGVAALQAA HHCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHH INPAPTSALYFVAKGDGTSVFSDTLGDHNKAVDKYIRGQ CCCCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHHCCC >Mature Secondary Structure SLLKKCAATIVALAVVVAAAGAGGGYYWATRPLLLGSASLDVTIKPRSSVKSVALQLKR HHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEECCCEEEEECCHHHHHHHHHHHHC GGVPVEPFAFVAMTRVLGLSSRLKSGNYEFKTGITPYDVLQKIARGDVNEYVATVIEGWT CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCHHHHHHHHHCCCH FKRMRAELDANPDLAHATAGMSDAELLRAIGASDGAVQRGSGEGLFFPDTYLFDKGTSDL HHHHHHHCCCCCCHHHHHCCCCHHHHHHHHCCCCCCEECCCCCCEECCCCEEECCCCCHH NIYRRAYRLMQTRIDEAWAARTPGLPYKTPYEMLTIASIVEKETGHAADRAFVAAVFANR HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LRIGMPLQTDPSVIYGLGDAYDGRLRKRDLQADTPYNTYTRRGLPPTPIALPGVAALQAA HHCCCCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHH INPAPTSALYFVAKGDGTSVFSDTLGDHNKAVDKYIRGQ CCCCCCCEEEEEECCCCCHHHHHHHCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]