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The map label for this gene is yfdE [H]

Identifier: 116689845

GI number: 116689845

Start: 2026078

End: 2027283

Strand: Reverse

Name: yfdE [H]

Synonym: Bcen2424_1824

Alternate gene names: 116689845

Gene position: 2027283-2026078 (Counterclockwise)

Preceding gene: 116689846

Following gene: 116689844

Centisome position: 58.19

GC content: 68.16

Gene sequence:

>1206_bases
ATGAGCACCAGCCAGGGCCCGCTCGCGGGCGTCAAAGTGCTCGAATTCGGAACGCTGATCGCGGGGCCGTTCGCGTCGCG
GCTGTTCGCCGAATTCGGCGCGGAAGTGATCAAGATCGAGGATCCGAACGGCGGCGACCCGCTGCGCAAGTGGCGCAAGC
TCCACCCGGAGCAGGGCGGCACGTCGCTGTGGTGGTCGGTACAGGCGCGCAACAAGAAATCGGTCACGCTCAACCTGAAA
GCTGACGCCGGCAAGGCGATCGCGCGGCAGCTCGCGAGCGAGGCCGACATCGTGATCGAGAACTTCCGCCCGGGCCTGCT
CGAAAAGCTCGGGCTCGGCTACGACGTGCTGTCGGCCGACAATCCGGGCCTCGTGATGGTGCGCCTGTCCGGCTACGGGC
AGACGGGCCCGTACCGCGACCGGCCCGGCTTCGGCGCGATCGCCGAATCGATGGGCGGGCTGCGCCACATCACCGGCTAT
CCGGATCTGCCGCCGCCGCGCATCGGCATCTCGATCGGCGACTCGATCGCGGCGCTGCACGGCGTGATCGGCGCGCTGAT
GGCGCTCCATCACCGCAAGGTTAACGGCGGCGCGGGGCAGGTGGTCGACGTTGCACTGTATGAAGCCGTCTTCAACATGA
TGGAAAGCGTGGTGCCCGAGTACGGCGTGTACGGGATGGTGCGCGAGCGCACCGGCGCGTCGCTGCCGGGCATCGTGCCG
TCGAATACGTACGCATGCCGCGACGGCAGCATCGTGATCGGCGGCAACAGCGATCCGATCTTCAAGCGGCTGATGAAGGC
GATCGAGCGCGACGACCTGGCCGACGATCCCGCGCTCGCGCAAAACGACGGGCGCGTGCCGCGCACGCAGGAAATCGACG
ACGCGATCGCCGCGTGGCTCGCGCCGCGCACGATCGACGAGGCTCTCGTCGTGCTCAATGCGGCCGACGTGCCGGCCGGG
CGCATCTACAGCGCGGCCGACATGTTCACCGATCCGCAGTTCGTCGCGCGTCAGATGATCCAGCGTTTCAAGCTGGCCGA
CGGCACCGACATTCCGCTGCCGAACATCACGCCGAAACTGTCGGACACGCCGGGCGAAACACGCTGGCTCGGGCCCGAGC
TCGGCGAGCATACCGACGAGGTGTTGCGCGGCCTCGGCTACGACGCACAGGCGATTGCCGCGCTGCGCGAGGCGGGCGCG
ATCTGA

Upstream 100 bases:

>100_bases
CGTCGACGCGGGCACCATCGCCCGCGCAATGCTCGATCGTCGCACGATGTAAGCCGGGCGCCGCCTGCCGGCGGCGCCGT
TCCTCATGCCAGGGAGACAC

Downstream 100 bases:

>100_bases
GTGCGCCGAGGCCTGCGCGCTTCGCGCCGGGCCTCCCGATGAGGGTTTCCCCAAGGCGATTTTCTTTGGGCGGAAAACCC
GGTCGGCCCGGTGTTTTCCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 401; Mature: 400

Protein sequence:

>401_residues
MSTSQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPNGGDPLRKWRKLHPEQGGTSLWWSVQARNKKSVTLNLK
ADAGKAIARQLASEADIVIENFRPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
PDLPPPRIGISIGDSIAALHGVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVP
SNTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWLAPRTIDEALVVLNAADVPAG
RIYSAADMFTDPQFVARQMIQRFKLADGTDIPLPNITPKLSDTPGETRWLGPELGEHTDEVLRGLGYDAQAIAALREAGA
I

Sequences:

>Translated_401_residues
MSTSQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPNGGDPLRKWRKLHPEQGGTSLWWSVQARNKKSVTLNLK
ADAGKAIARQLASEADIVIENFRPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGY
PDLPPPRIGISIGDSIAALHGVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVP
SNTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWLAPRTIDEALVVLNAADVPAG
RIYSAADMFTDPQFVARQMIQRFKLADGTDIPLPNITPKLSDTPGETRWLGPELGEHTDEVLRGLGYDAQAIAALREAGA
I
>Mature_400_residues
STSQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPNGGDPLRKWRKLHPEQGGTSLWWSVQARNKKSVTLNLKA
DAGKAIARQLASEADIVIENFRPGLLEKLGLGYDVLSADNPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYP
DLPPPRIGISIGDSIAALHGVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVPS
NTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWLAPRTIDEALVVLNAADVPAGR
IYSAADMFTDPQFVARQMIQRFKLADGTDIPLPNITPKLSDTPGETRWLGPELGEHTDEVLRGLGYDAQAIAALREAGAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=396, Percent_Identity=31.0606060606061, Blast_Score=202, Evalue=3e-52,
Organism=Homo sapiens, GI300863124, Length=423, Percent_Identity=30.4964539007092, Blast_Score=191, Evalue=1e-48,
Organism=Homo sapiens, GI300863126, Length=396, Percent_Identity=29.2929292929293, Blast_Score=170, Evalue=2e-42,
Organism=Homo sapiens, GI13376042, Length=423, Percent_Identity=27.4231678486998, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI266456254, Length=394, Percent_Identity=26.1421319796954, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI42794625, Length=394, Percent_Identity=26.1421319796954, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI266458393, Length=260, Percent_Identity=29.2307692307692, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI266458397, Length=260, Percent_Identity=29.2307692307692, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI266458395, Length=131, Percent_Identity=35.8778625954198, Blast_Score=90, Evalue=4e-18,
Organism=Homo sapiens, GI42822893, Length=131, Percent_Identity=35.8778625954198, Blast_Score=89, Evalue=7e-18,
Organism=Escherichia coli, GI87082093, Length=337, Percent_Identity=33.5311572700297, Blast_Score=201, Evalue=7e-53,
Organism=Escherichia coli, GI1788717, Length=436, Percent_Identity=29.5871559633028, Blast_Score=158, Evalue=6e-40,
Organism=Escherichia coli, GI1786222, Length=403, Percent_Identity=30.0248138957816, Blast_Score=157, Evalue=2e-39,
Organism=Caenorhabditis elegans, GI115535051, Length=341, Percent_Identity=26.6862170087977, Blast_Score=103, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI32564160, Length=299, Percent_Identity=27.0903010033445, Blast_Score=88, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24648431, Length=396, Percent_Identity=31.5656565656566, Blast_Score=215, Evalue=5e-56,
Organism=Drosophila melanogaster, GI24585488, Length=370, Percent_Identity=27.5675675675676, Blast_Score=108, Evalue=8e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42897; Mature: 42766

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPNGGDPLRKWRKLHPEQGG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC
TSLWWSVQARNKKSVTLNLKADAGKAIARQLASEADIVIENFRPGLLEKLGLGYDVLSAD
CEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHCCEEEECCCCHHHHHHCCCEEEECCC
NPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYPDLPPPRIGISIGDSIAALH
CCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHH
GVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC
SNTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWL
CCCEEECCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
APRTIDEALVVLNAADVPAGRIYSAADMFTDPQFVARQMIQRFKLADGTDIPLPNITPKL
CHHHHHHHHEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SDTPGETRWLGPELGEHTDEVLRGLGYDAQAIAALREAGAI
CCCCCCCEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
STSQGPLAGVKVLEFGTLIAGPFASRLFAEFGAEVIKIEDPNGGDPLRKWRKLHPEQGG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCC
TSLWWSVQARNKKSVTLNLKADAGKAIARQLASEADIVIENFRPGLLEKLGLGYDVLSAD
CEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHCCEEEECCCCHHHHHHCCCEEEECCC
NPGLVMVRLSGYGQTGPYRDRPGFGAIAESMGGLRHITGYPDLPPPRIGISIGDSIAALH
CCCEEEEEECCCCCCCCCCCCCCCHHHHHHCCCCEEECCCCCCCCCCEEEECCHHHHHHH
GVIGALMALHHRKVNGGAGQVVDVALYEAVFNMMESVVPEYGVYGMVRERTGASLPGIVP
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCC
SNTYACRDGSIVIGGNSDPIFKRLMKAIERDDLADDPALAQNDGRVPRTQEIDDAIAAWL
CCCEEECCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
APRTIDEALVVLNAADVPAGRIYSAADMFTDPQFVARQMIQRFKLADGTDIPLPNITPKL
CHHHHHHHHEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
SDTPGETRWLGPELGEHTDEVLRGLGYDAQAIAALREAGAI
CCCCCCCEECCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]