| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689421
Identifier: 116689421
GI number: 116689421
Start: 1542764
End: 1543462
Strand: Direct
Name: 116689421
Synonym: Bcen2424_1399
Alternate gene names: NA
Gene position: 1542764-1543462 (Clockwise)
Preceding gene: 116689420
Following gene: 116689422
Centisome position: 44.28
GC content: 71.39
Gene sequence:
>699_bases ATGAAGCACGAGGACACGATCCTTGCCGCGGTGGCCGGCTTCGTCGATACGCTGAGCTTCGTCGCGCTGTTCGGGCTGTT CACCGCGCACGTGACCGGCAACTTCGTGCTGATCGGCGCGGGCATCGCGGGCTTCGGCCAGGGCGTCATACTGAAGCTCA GCGTGTTTCCGGCTTTCGTGTGCGGCGTGATCGCGAGCAGCCTGATCGCGCGGTCGATGGCCGCGCGACCGGCCTGGCAG GGCACGCGCGTGCTGCACACGGTGCAGGCCGTGCTGCTGCTCGGCTTCTGTGCGGCCGGCGTGTGGGCGACGCCCGTCAC GCAGCCTGACAGCCTGGCGGCGCTCGTGGCCGGCATCGTCGGCACGTTCGCGATGGGCGTGCAGAATGCGCATCCGCGCG TGATCGCCCGCGCGGGCGGCGTGCCGAATACGGTGATGACCGGCAACGTCACGCAGGCGATCCTGGATGCGGTCGACATC CTGTCGCCCGGCACGGCGGACGGCGTGCGCGCCACCGCGCGCGCACGCTTCGCGAAGATGCTGCCGGCGATCGTCGCGTT CGCGCTCGGCGCGGCGGGCGGTGCGCTCGGGTTTCGCTATGTCGGGTTCCTGGCGCTGCTGGTGCCCGTCGGCGCGCTCG CGATGCTCGCGCTGTGCGCGGCGCCATCAGCCGGCACCACCACGCAGGAGCGCGCATGA
Upstream 100 bases:
>100_bases TGACGGTGCTGGTGCCGCCGTTCGAGTCGGACGGCCGCGACGCGGCGCTCGTGCAGTTCCCGGGCGGCTACGTCGCCGAA ATTCACACGAGCGCGGCGCG
Downstream 100 bases:
>100_bases TCGAGCGACGCAGGCGACGCCACGGCCGCCGCGTCGAGCGGGCCGCGCGCGTGTCGATCGTCGCGGGGCTGCTGTTCGCG GGCGCCGACGCGGTGTGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: Permease Transmembrane Protein
Number of amino acids: Translated: 232; Mature: 232
Protein sequence:
>232_residues MKHEDTILAAVAGFVDTLSFVALFGLFTAHVTGNFVLIGAGIAGFGQGVILKLSVFPAFVCGVIASSLIARSMAARPAWQ GTRVLHTVQAVLLLGFCAAGVWATPVTQPDSLAALVAGIVGTFAMGVQNAHPRVIARAGGVPNTVMTGNVTQAILDAVDI LSPGTADGVRATARARFAKMLPAIVAFALGAAGGALGFRYVGFLALLVPVGALAMLALCAAPSAGTTTQERA
Sequences:
>Translated_232_residues MKHEDTILAAVAGFVDTLSFVALFGLFTAHVTGNFVLIGAGIAGFGQGVILKLSVFPAFVCGVIASSLIARSMAARPAWQ GTRVLHTVQAVLLLGFCAAGVWATPVTQPDSLAALVAGIVGTFAMGVQNAHPRVIARAGGVPNTVMTGNVTQAILDAVDI LSPGTADGVRATARARFAKMLPAIVAFALGAAGGALGFRYVGFLALLVPVGALAMLALCAAPSAGTTTQERA >Mature_232_residues MKHEDTILAAVAGFVDTLSFVALFGLFTAHVTGNFVLIGAGIAGFGQGVILKLSVFPAFVCGVIASSLIARSMAARPAWQ GTRVLHTVQAVLLLGFCAAGVWATPVTQPDSLAALVAGIVGTFAMGVQNAHPRVIARAGGVPNTVMTGNVTQAILDAVDI LSPGTADGVRATARARFAKMLPAIVAFALGAAGGALGFRYVGFLALLVPVGALAMLALCAAPSAGTTTQERA
Specific function: Unknown
COG id: COG3619
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23384; Mature: 23384
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHEDTILAAVAGFVDTLSFVALFGLFTAHVTGNFVLIGAGIAGFGQGVILKLSVFPAFV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHCCCCCCEEEHHHHHHHH CGVIASSLIARSMAARPAWQGTRVLHTVQAVLLLGFCAAGVWATPVTQPDSLAALVAGIV HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH GTFAMGVQNAHPRVIARAGGVPNTVMTGNVTQAILDAVDILSPGTADGVRATARARFAKM HHHHHHHCCCCCHHEEECCCCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH LPAIVAFALGAAGGALGFRYVGFLALLVPVGALAMLALCAAPSAGTTTQERA HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MKHEDTILAAVAGFVDTLSFVALFGLFTAHVTGNFVLIGAGIAGFGQGVILKLSVFPAFV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHCCCCCCEEEHHHHHHHH CGVIASSLIARSMAARPAWQGTRVLHTVQAVLLLGFCAAGVWATPVTQPDSLAALVAGIV HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH GTFAMGVQNAHPRVIARAGGVPNTVMTGNVTQAILDAVDILSPGTADGVRATARARFAKM HHHHHHHCCCCCHHEEECCCCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH LPAIVAFALGAAGGALGFRYVGFLALLVPVGALAMLALCAAPSAGTTTQERA HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA