| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689410
Identifier: 116689410
GI number: 116689410
Start: 1533205
End: 1533960
Strand: Direct
Name: 116689410
Synonym: Bcen2424_1388
Alternate gene names: NA
Gene position: 1533205-1533960 (Clockwise)
Preceding gene: 116689409
Following gene: 116689415
Centisome position: 44.01
GC content: 68.78
Gene sequence:
>756_bases ATGTCGTATCACATTCGGATCGCGTTTCGAACGGTAGGGGTGTGCACGGCCGTGGTCGCCGCGCTGTCAGGGTGCGCAGG GATGCTGACCGCATCGTCCGGTCCGCAGCCGGAACGCGTGGCGGCGCAGAAGGAAGAAGGCGCCCGCTATACCCAGACGC TGACGTCGTTCATCGCGCTGGTGTCGAACGCCCAGGCCTCCACGCCTGACAGTCGCGCCAGAATACTCGACGCTTACCAG CGCGTCCTGTATCAGTACTCGGTGGCTGCCGTGAGCTGGGTGCGGCTCGTCCATCCGGCGCTGCAGCCCTTGCCGGCGTC CCTGCAGCCGCTTCCCGCGCCGACGGGCACGCCCACGACGGCCGAGGTCGATCGCGGCTATGAACACGCGCTCGAGATGC GGGTGGCGATGTGGGATATCGGCGAGGCGGCGATCTGGGGGAAGACCTCGAAGATGTCGATCCCCCGCTACCGCGGCACC GCGCCTGCCGTGCCGATGCCGCCGCCGCTGCCGCCATTCCAGGACGCGCGGGATTCCCGGTATGCGAGGCTGGTTGCGCT GACGAAGCAGGCGGACGACGCGCAGCGTGCGTCGATCGAGCAACAGCGGCAGGTCGAGGCCAAGGAGTTGGCCAAGGCGC TTGCCATGGCGAGGGCCGTGCCGTATTCGCCGCCGCAAGCGCAGGGCCAGCCTCAGCAGGAACAGCGCTGGTGTACGCAG TCGGGTGGCGGAGTCGTGGGCCGCGTGCCGTGCTGA
Upstream 100 bases:
>100_bases CCGGCGCCATCGCTCGGGGTCCAGCGGTCCAGCGGCGCGGCTGCCGACGGCGGACACCGCATTGATTCATTGGGCGTTTG TCTTGTGTCGGGGTGCTGCC
Downstream 100 bases:
>100_bases GCCCGTATCGCCGGGCGGCCTCGGTCGCCCGTTGCGCGTTGCGTTAAGCCTTGCGTGCCGGCTGGCGCGTCCATTCGTTT TCTTCGCCCGGCACCTTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MSYHIRIAFRTVGVCTAVVAALSGCAGMLTASSGPQPERVAAQKEEGARYTQTLTSFIALVSNAQASTPDSRARILDAYQ RVLYQYSVAAVSWVRLVHPALQPLPASLQPLPAPTGTPTTAEVDRGYEHALEMRVAMWDIGEAAIWGKTSKMSIPRYRGT APAVPMPPPLPPFQDARDSRYARLVALTKQADDAQRASIEQQRQVEAKELAKALAMARAVPYSPPQAQGQPQQEQRWCTQ SGGGVVGRVPC
Sequences:
>Translated_251_residues MSYHIRIAFRTVGVCTAVVAALSGCAGMLTASSGPQPERVAAQKEEGARYTQTLTSFIALVSNAQASTPDSRARILDAYQ RVLYQYSVAAVSWVRLVHPALQPLPASLQPLPAPTGTPTTAEVDRGYEHALEMRVAMWDIGEAAIWGKTSKMSIPRYRGT APAVPMPPPLPPFQDARDSRYARLVALTKQADDAQRASIEQQRQVEAKELAKALAMARAVPYSPPQAQGQPQQEQRWCTQ SGGGVVGRVPC >Mature_250_residues SYHIRIAFRTVGVCTAVVAALSGCAGMLTASSGPQPERVAAQKEEGARYTQTLTSFIALVSNAQASTPDSRARILDAYQR VLYQYSVAAVSWVRLVHPALQPLPASLQPLPAPTGTPTTAEVDRGYEHALEMRVAMWDIGEAAIWGKTSKMSIPRYRGTA PAVPMPPPLPPFQDARDSRYARLVALTKQADDAQRASIEQQRQVEAKELAKALAMARAVPYSPPQAQGQPQQEQRWCTQS GGGVVGRVPC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27124; Mature: 26993
Theoretical pI: Translated: 9.57; Mature: 9.57
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYHIRIAFRTVGVCTAVVAALSGCAGMLTASSGPQPERVAAQKEEGARYTQTLTSFIAL CCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHH VSNAQASTPDSRARILDAYQRVLYQYSVAAVSWVRLVHPALQPLPASLQPLPAPTGTPTT HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC AEVDRGYEHALEMRVAMWDIGEAAIWGKTSKMSIPRYRGTAPAVPMPPPLPPFQDARDSR HHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH YARLVALTKQADDAQRASIEQQRQVEAKELAKALAMARAVPYSPPQAQGQPQQEQRWCTQ HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC SGGGVVGRVPC CCCCEEECCCC >Mature Secondary Structure SYHIRIAFRTVGVCTAVVAALSGCAGMLTASSGPQPERVAAQKEEGARYTQTLTSFIAL CEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHH VSNAQASTPDSRARILDAYQRVLYQYSVAAVSWVRLVHPALQPLPASLQPLPAPTGTPTT HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC AEVDRGYEHALEMRVAMWDIGEAAIWGKTSKMSIPRYRGTAPAVPMPPPLPPFQDARDSR HHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH YARLVALTKQADDAQRASIEQQRQVEAKELAKALAMARAVPYSPPQAQGQPQQEQRWCTQ HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC SGGGVVGRVPC CCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA