| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is yhjS [H]
Identifier: 116689404
GI number: 116689404
Start: 1525543
End: 1527435
Strand: Direct
Name: yhjS [H]
Synonym: Bcen2424_1382
Alternate gene names: 116689404
Gene position: 1525543-1527435 (Clockwise)
Preceding gene: 116689403
Following gene: 116689405
Centisome position: 43.79
GC content: 74.54
Gene sequence:
>1893_bases ATGTGGCCGGCGGGCGGCCGTGCCGGCGCCTTGAGCCGGCTCGCGATCGACGGCCTGCCCGACACCTGGACGCAACTGGA AGCCGGCGGCCTTTACGCGATCTACGCGGCCGGCGGCACGCCGGCCTGCGATGCGCTCGTCTGGGAAAGCGCGCGTCAGG CGCGCACGCGCGACGTCACGATCGTGCTGGCGCGCGATCCGGCGCGCGTCGCCACGCAGATGGCATCGCTCGGCTTCGCG GGCGGCGTGCAGCCGGCCGGCTGGCCGCGCAACCTGAACGTGCTGGCGATGCCGGCTGCGGTCGAGCCGGCCGACGACGG TGCCGACGCCGGCGCAGCCGGCAACGCACCGCGCCGCGCGGCGCCGGGCCCGTTCGCGCGGCTGACCGGCGGCTTGCGCG CGATGAAGCGCTATGGATTTCACGCGCGTTCGCTGTATTTCGTCGAAGGCGCCCAGCGCTGGTTCAGCTGGGACGATCCG GTCGCGCTCGCGGACGAAGCGCACGCGCTGGCCGACTGGTGCCGCACGCGCCGGATTGCGCTCGTGCTGCTGCTCGACCC TGAAGCGACCCGCGCGGGCGGCGACGCGCGCGCCGACGATGCGCCGCTCGTGCGCGATGCCGATCGCACGCCGCGCAGCG GCTTCCACGGGATCTGTTCGGGCGTCGCGCAGTTGCAGCGCACGCATGGCGAGTTGTTGTGGGTGGTCGATTTCTGGCGC GCGGGCGACACGCTCGCGGCCGGCGAGGTGCGGCCGCTGCGCTTCGCACCGGGCGGCCGGCTGTCGGCGAGCGTCGATGG CGGCGCGACCGAACCGGCACGGCGGATGAAGCTCGCGAGCGACGAGGATCGCGTGGTGGTCAGCCGCGCGGTGCTCGACG GTGCGAGCCGCGTGCCGGACGGCTGGGAGATCGTCGACGACAACGCGGCCGTCGTCGCCGCGTGCGCGAGCGCGCAGGCC GCGACCGCGGTGCTCGTGTTCCGCTCGCACGCGCAGCTCGAAGCGCTGTGCGCGGACGTGCACGCGCTGCGCCGGCAGTG CGGCGGCGCGCTGAAGATCGCGGTCGTCGAGCGCGGCGAGGTGCTGCGCCAGCAGTTCGAGATGCTCGTGCTGAGCGTCG GCGCGAACCGGGTCGTCGCGCGCGACCTGCCCGTCTCGCGGATGCAGGCCGCCGTGCACGCGCTGCACGGCCAGCTCTAC GCGCGGCCCGTCGCGGCCGACTACCGCGCGGCGCTCGCGGCCGCGCTCGGCGATTCGGTGCTCGGTTATCTGCCGGTCGG CGCGTTTTGCCAGCGGATTCGCGCGGTGCTCGATCGCGGCGCGGTGCTCGCGCTGCCGCACACGCTCGCGAAGCTCACGC TGTTGCCGGGCGTGTCGCACGTCGACGCGCTGCGGCACTGCCGGCCGCGCCGCGCGGGCGACGTCGTGACGGCCGATGCC GGGCACCTGTTCGTGTTCCTGTTCGCCTGCGAGCCGGCCGATGCCGAGGACGCGCTCGCGCGGATTTTCGAGGTGCCGGT CGATACGCTGTCCGACCGCGTCGTGTGCCTCGGGCAGGGCAGCATCGACACCGAGCTCGACGCGCTGAAGGCCGAGAACC GCCGCGCGCCGATCGCCGACTACAGCGACCTGTTCGCGGCGACGCGGCCGGCGGGCGCCGCACGCGCAGCAGCCGCGCCC GTCGAACCCGGCGCGGCATTGCCCGATGCAGGCGAGGTGAGCGACGCGATCGACGCGATCGATACCGTCGTCGCGCTCGA CGCGATCGGTATGCCGCAGGCGTTGGCGCCCATCGCCGTCGACGCGTCGCCGCCGGACCCCGTCATTTCCGCCGCGCGTG CGCGCGGCGCCGTCCGCAGCGCGATGCCGTTGCGCAAGCAGGAGGACGCATGA
Upstream 100 bases:
>100_bases TTCGGATTACTAGGGGAACGCCGTGACTACGGAATTCGATGCCACCCGCTCCGCGCCCGGTGCCATTGGCCTGGCCGATC GCCTGCGCGCGCTGCTGCGC
Downstream 100 bases:
>100_bases TCGCGGAACTCGTCATCGGCTTCGTCGTCGGTATCGTGATTGCGGTACCGGTGTGGATCGTCGCGCAGCACCTCGGCATT GGCCGCGGCTTCCATGCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 630; Mature: 630
Protein sequence:
>630_residues MWPAGGRAGALSRLAIDGLPDTWTQLEAGGLYAIYAAGGTPACDALVWESARQARTRDVTIVLARDPARVATQMASLGFA GGVQPAGWPRNLNVLAMPAAVEPADDGADAGAAGNAPRRAAPGPFARLTGGLRAMKRYGFHARSLYFVEGAQRWFSWDDP VALADEAHALADWCRTRRIALVLLLDPEATRAGGDARADDAPLVRDADRTPRSGFHGICSGVAQLQRTHGELLWVVDFWR AGDTLAAGEVRPLRFAPGGRLSASVDGGATEPARRMKLASDEDRVVVSRAVLDGASRVPDGWEIVDDNAAVVAACASAQA ATAVLVFRSHAQLEALCADVHALRRQCGGALKIAVVERGEVLRQQFEMLVLSVGANRVVARDLPVSRMQAAVHALHGQLY ARPVAADYRAALAAALGDSVLGYLPVGAFCQRIRAVLDRGAVLALPHTLAKLTLLPGVSHVDALRHCRPRRAGDVVTADA GHLFVFLFACEPADAEDALARIFEVPVDTLSDRVVCLGQGSIDTELDALKAENRRAPIADYSDLFAATRPAGAARAAAAP VEPGAALPDAGEVSDAIDAIDTVVALDAIGMPQALAPIAVDASPPDPVISAARARGAVRSAMPLRKQEDA
Sequences:
>Translated_630_residues MWPAGGRAGALSRLAIDGLPDTWTQLEAGGLYAIYAAGGTPACDALVWESARQARTRDVTIVLARDPARVATQMASLGFA GGVQPAGWPRNLNVLAMPAAVEPADDGADAGAAGNAPRRAAPGPFARLTGGLRAMKRYGFHARSLYFVEGAQRWFSWDDP VALADEAHALADWCRTRRIALVLLLDPEATRAGGDARADDAPLVRDADRTPRSGFHGICSGVAQLQRTHGELLWVVDFWR AGDTLAAGEVRPLRFAPGGRLSASVDGGATEPARRMKLASDEDRVVVSRAVLDGASRVPDGWEIVDDNAAVVAACASAQA ATAVLVFRSHAQLEALCADVHALRRQCGGALKIAVVERGEVLRQQFEMLVLSVGANRVVARDLPVSRMQAAVHALHGQLY ARPVAADYRAALAAALGDSVLGYLPVGAFCQRIRAVLDRGAVLALPHTLAKLTLLPGVSHVDALRHCRPRRAGDVVTADA GHLFVFLFACEPADAEDALARIFEVPVDTLSDRVVCLGQGSIDTELDALKAENRRAPIADYSDLFAATRPAGAARAAAAP VEPGAALPDAGEVSDAIDAIDTVVALDAIGMPQALAPIAVDASPPDPVISAARARGAVRSAMPLRKQEDA >Mature_630_residues MWPAGGRAGALSRLAIDGLPDTWTQLEAGGLYAIYAAGGTPACDALVWESARQARTRDVTIVLARDPARVATQMASLGFA GGVQPAGWPRNLNVLAMPAAVEPADDGADAGAAGNAPRRAAPGPFARLTGGLRAMKRYGFHARSLYFVEGAQRWFSWDDP VALADEAHALADWCRTRRIALVLLLDPEATRAGGDARADDAPLVRDADRTPRSGFHGICSGVAQLQRTHGELLWVVDFWR AGDTLAAGEVRPLRFAPGGRLSASVDGGATEPARRMKLASDEDRVVVSRAVLDGASRVPDGWEIVDDNAAVVAACASAQA ATAVLVFRSHAQLEALCADVHALRRQCGGALKIAVVERGEVLRQQFEMLVLSVGANRVVARDLPVSRMQAAVHALHGQLY ARPVAADYRAALAAALGDSVLGYLPVGAFCQRIRAVLDRGAVLALPHTLAKLTLLPGVSHVDALRHCRPRRAGDVVTADA GHLFVFLFACEPADAEDALARIFEVPVDTLSDRVVCLGQGSIDTELDALKAENRRAPIADYSDLFAATRPAGAARAAAAP VEPGAALPDAGEVSDAIDAIDTVVALDAIGMPQALAPIAVDASPPDPVISAARARGAVRSAMPLRKQEDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789958, Length=255, Percent_Identity=33.3333333333333, Blast_Score=142, Evalue=5e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017745 [H]
Pfam domain/function: PF10995 DUF2819 [H]
EC number: NA
Molecular weight: Translated: 66072; Mature: 66072
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWPAGGRAGALSRLAIDGLPDTWTQLEAGGLYAIYAAGGTPACDALVWESARQARTRDVT CCCCCCCCCCHHHHEECCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEE IVLARDPARVATQMASLGFAGGVQPAGWPRNLNVLAMPAAVEPADDGADAGAAGNAPRRA EEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC APGPFARLTGGLRAMKRYGFHARSLYFVEGAQRWFSWDDPVALADEAHALADWCRTRRIA CCCCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCCCCEEHHHHHHHHHHHHHCCEEE LVLLLDPEATRAGGDARADDAPLVRDADRTPRSGFHGICSGVAQLQRTHGELLWVVDFWR EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEC AGDTLAAGEVRPLRFAPGGRLSASVDGGATEPARRMKLASDEDRVVVSRAVLDGASRVPD CCCEEECCCCCEEEECCCCCEEEECCCCCCCHHHHHCCCCCCCCEEHHHHHHCCCCCCCC GWEIVDDNAAVVAACASAQAATAVLVFRSHAQLEALCADVHALRRQCGGALKIAVVERGE CCEEECCCCEEEEEHHHHHHHEEEEEHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECHHH VLRQQFEMLVLSVGANRVVARDLPVSRMQAAVHALHGQLYARPVAADYRAALAAALGDSV HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LGYLPVGAFCQRIRAVLDRGAVLALPHTLAKLTLLPGVSHVDALRHCRPRRAGDVVTADA HHHCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEECC GHLFVFLFACEPADAEDALARIFEVPVDTLSDRVVCLGQGSIDTELDALKAENRRAPIAD CCEEEEEEECCCCCHHHHHHHHHHCCHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCC YSDLFAATRPAGAARAAAAPVEPGAALPDAGEVSDAIDAIDTVVALDAIGMPQALAPIAV HHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCEEE DASPPDPVISAARARGAVRSAMPLRKQEDA CCCCCCHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MWPAGGRAGALSRLAIDGLPDTWTQLEAGGLYAIYAAGGTPACDALVWESARQARTRDVT CCCCCCCCCCHHHHEECCCCCHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEE IVLARDPARVATQMASLGFAGGVQPAGWPRNLNVLAMPAAVEPADDGADAGAAGNAPRRA EEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC APGPFARLTGGLRAMKRYGFHARSLYFVEGAQRWFSWDDPVALADEAHALADWCRTRRIA CCCCHHHHHHHHHHHHHCCCCCEEEEEEECHHHHCCCCCCEEHHHHHHHHHHHHHCCEEE LVLLLDPEATRAGGDARADDAPLVRDADRTPRSGFHGICSGVAQLQRTHGELLWVVDFWR EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEC AGDTLAAGEVRPLRFAPGGRLSASVDGGATEPARRMKLASDEDRVVVSRAVLDGASRVPD CCCEEECCCCCEEEECCCCCEEEECCCCCCCHHHHHCCCCCCCCEEHHHHHHCCCCCCCC GWEIVDDNAAVVAACASAQAATAVLVFRSHAQLEALCADVHALRRQCGGALKIAVVERGE CCEEECCCCEEEEEHHHHHHHEEEEEHHCCHHHHHHHHHHHHHHHHCCCEEEEEEECHHH VLRQQFEMLVLSVGANRVVARDLPVSRMQAAVHALHGQLYARPVAADYRAALAAALGDSV HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH LGYLPVGAFCQRIRAVLDRGAVLALPHTLAKLTLLPGVSHVDALRHCRPRRAGDVVTADA HHHCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEECC GHLFVFLFACEPADAEDALARIFEVPVDTLSDRVVCLGQGSIDTELDALKAENRRAPIAD CCEEEEEEECCCCCHHHHHHHHHHCCHHHCCCCEEEEECCCCCCHHHHHHHCCCCCCCCC YSDLFAATRPAGAARAAAAPVEPGAALPDAGEVSDAIDAIDTVVALDAIGMPQALAPIAV HHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCEEE DASPPDPVISAARARGAVRSAMPLRKQEDA CCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]