| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116689294
Identifier: 116689294
GI number: 116689294
Start: 1402990
End: 1403697
Strand: Direct
Name: 116689294
Synonym: Bcen2424_1272
Alternate gene names: NA
Gene position: 1402990-1403697 (Clockwise)
Preceding gene: 116689293
Following gene: 116689295
Centisome position: 40.27
GC content: 71.33
Gene sequence:
>708_bases ATGACGCTCGATGAAGTACTGAACTCGCTGTTTCCCGCGGGCCATTCGATTGTGCGCAATGGCGGCCTGCTGACGGGCCA CGCGGAACTGGCCGGCACGCGCGTCGACGTGATCGGCGTGGCCGACCGCCTGCCGTTCGGCATCGACGAGGCACTGACGC TCGCGTCGCGGGTGCTCGACACGGTCGCGCGCGGCGGCGACACGCCGATCCTCGTGCTGGTCGACAGCGACAGCCAGCGG ATGAGCAAGCGCGACGAACTGCTGGGCCTGAACGAAGGGCTGTCGCATCTCGCCAAATGCCTGATGCACGCGGATCTCGC CGGACACCGGACGATCGGCGTGCTGTACGGCCACACGGCCGCCGGCGCGTTCATCGCGACCGCGCTCGCGACGCGCACGC TGCTCGCGGTGCCGGGCGCCGAGCCGGAGGTGATGGACCTGCCGTCGATGTCGCGCGTGACCAAGCTGCCGATCGACGTG CTGAAGGAGATGGCGCGTTCGACACCGGTATTCGCGCCGGGGCTCGACAACCTCGTGAAGATGGGCGCCGTCGACGCCGT GCTCGATCCGTCCCGCGCGCTCGACGCGCAGGTCGGCGAATGGCTGGGCAAGCCGGCCGAGCGCATCGACCGGCGCGCGG CGCGCGGCCGGCCGGTCGCGACCGACGTCGCCGCCCGCGTCGAGGCACTCGCGCGTGCCGCACGCTGA
Upstream 100 bases:
>100_bases CAGTTACAGGAGCAGAAATGAAACGACCCCCACGCTCACTTCGTTCGCTGCCCCCCGAGGGGGCGCCTGCCTCCCTTGGG GCGGCCCGGCGGGAGGCAGC
Downstream 100 bases:
>100_bases GCTGCCGCTGCGCCGCCACACGCTCGTCACGCTGACGGCGGGCGGGTGGGGCGCGGCATTCGCCCGCGACCCCGCGCTCG CGGGTGATCCGCTCGTGCGC
Product: malonate decarboxylase gamma subunit
Products: NA
Alternate protein names: Malonate Decarboxylase Subunit Gamma; Malonate Decarboxylase Gamma-Subunit; Malonate Decarboxylase Gamma-Subunit MdcE; Malonate Decarboxylase Subunit MdcE
Number of amino acids: Translated: 235; Mature: 234
Protein sequence:
>235_residues MTLDEVLNSLFPAGHSIVRNGGLLTGHAELAGTRVDVIGVADRLPFGIDEALTLASRVLDTVARGGDTPILVLVDSDSQR MSKRDELLGLNEGLSHLAKCLMHADLAGHRTIGVLYGHTAAGAFIATALATRTLLAVPGAEPEVMDLPSMSRVTKLPIDV LKEMARSTPVFAPGLDNLVKMGAVDAVLDPSRALDAQVGEWLGKPAERIDRRAARGRPVATDVAARVEALARAAR
Sequences:
>Translated_235_residues MTLDEVLNSLFPAGHSIVRNGGLLTGHAELAGTRVDVIGVADRLPFGIDEALTLASRVLDTVARGGDTPILVLVDSDSQR MSKRDELLGLNEGLSHLAKCLMHADLAGHRTIGVLYGHTAAGAFIATALATRTLLAVPGAEPEVMDLPSMSRVTKLPIDV LKEMARSTPVFAPGLDNLVKMGAVDAVLDPSRALDAQVGEWLGKPAERIDRRAARGRPVATDVAARVEALARAAR >Mature_234_residues TLDEVLNSLFPAGHSIVRNGGLLTGHAELAGTRVDVIGVADRLPFGIDEALTLASRVLDTVARGGDTPILVLVDSDSQRM SKRDELLGLNEGLSHLAKCLMHADLAGHRTIGVLYGHTAAGAFIATALATRTLLAVPGAEPEVMDLPSMSRVTKLPIDVL KEMARSTPVFAPGLDNLVKMGAVDAVLDPSRALDAQVGEWLGKPAERIDRRAARGRPVATDVAARVEALARAAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24759; Mature: 24628
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLDEVLNSLFPAGHSIVRNGGLLTGHAELAGTRVDVIGVADRLPFGIDEALTLASRVLD CCHHHHHHHHCCCCHHHHHCCCEEECCHHHCCCEEEEEECHHCCCCCHHHHHHHHHHHHH TVARGGDTPILVLVDSDSQRMSKRDELLGLNEGLSHLAKCLMHADLAGHRTIGVLYGHTA HHHCCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHH AGAFIATALATRTLLAVPGAEPEVMDLPSMSRVTKLPIDVLKEMARSTPVFAPGLDNLVK HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHH MGAVDAVLDPSRALDAQVGEWLGKPAERIDRRAARGRPVATDVAARVEALARAAR HCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC >Mature Secondary Structure TLDEVLNSLFPAGHSIVRNGGLLTGHAELAGTRVDVIGVADRLPFGIDEALTLASRVLD CHHHHHHHHCCCCHHHHHCCCEEECCHHHCCCEEEEEECHHCCCCCHHHHHHHHHHHHH TVARGGDTPILVLVDSDSQRMSKRDELLGLNEGLSHLAKCLMHADLAGHRTIGVLYGHTA HHHCCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCHH AGAFIATALATRTLLAVPGAEPEVMDLPSMSRVTKLPIDVLKEMARSTPVFAPGLDNLVK HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCHHHHHH MGAVDAVLDPSRALDAQVGEWLGKPAERIDRRAARGRPVATDVAARVEALARAAR HCCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA