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The map label for this gene is 116689178

Identifier: 116689178

GI number: 116689178

Start: 1266174

End: 1266809

Strand: Reverse

Name: 116689178

Synonym: Bcen2424_1156

Alternate gene names: NA

Gene position: 1266809-1266174 (Counterclockwise)

Preceding gene: 116689181

Following gene: 116689177

Centisome position: 36.36

GC content: 70.75

Gene sequence:

>636_bases
ATGTCGTCTGCCCGCCCCGCGCCGCACCGGCGCCTCTCCCGCCTCATCCGCACGGCCGCGGCCCTCGCCGCCGCCGTGGC
GCTCACCGCGTGCACGCACGACGAGCCGCGCTGGAACCTGACCAACGTCACCGGCCACCTGCCCGATCTGTCGTTCAAGC
TGACGGGCGGCGACGGCCATCCCGTCGACGCCGATGCGTTCCGCGGCCGCGTCGCGCTCGTCTACTTCGGCTACACGCAC
TGCCCCGACGTCTGCCCCGAAACGCTGGCGCGGCTGATGGAAGTGCTGGCGAAGCTCGGCCCGCGGGCGGACGACGTGCG
CATCCTGTTCGTCTCGGTCGATCCCGCGCGCGATACGCCGCAGGCGATGCAATCCTATGTCGCCGCGTTCGACGCCGCGC
ATGCGCGCGGCCTGACCGGGACCGACGGCCAGATCGAATCGCTGGCCAAGCGCTATCGCGTCGCATACCAGATGGAAAAA
CGCGATCCGTCCGGCGGCTACGAAGTGACGCACAGCTCGGCCGTCTACATCTTCGACGCGACCGGCCGCGCGCGGCTGCT
CGCGACCGATCGCGATTCGCCCGACGCCATCGCCGCCGATGTGCGCCGGATCATCGACACTGCCTCCACGACCTGA

Upstream 100 bases:

>100_bases
AAGGACGCGGGCGCGCGAATTGCGCTACAGTCGCAACCGCCTGCCGCGCGGCGCATGGCATCGCGCCCCGGCTATCCATC
CAGTCCGATCGAGCCCCAGG

Downstream 100 bases:

>100_bases
ATTCCGCCATGAACAAGAAAACGACCCTCAAGACGTTCGCCCTCGTCGCCGCGCTGTGCGCCGGCGCCCACGCGTATGCC
GCCGGCGCGATCAGCGCGCA

Product: electron transport protein SCO1/SenC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSSARPAPHRRLSRLIRTAAALAAAVALTACTHDEPRWNLTNVTGHLPDLSFKLTGGDGHPVDADAFRGRVALVYFGYTH
CPDVCPETLARLMEVLAKLGPRADDVRILFVSVDPARDTPQAMQSYVAAFDAAHARGLTGTDGQIESLAKRYRVAYQMEK
RDPSGGYEVTHSSAVYIFDATGRARLLATDRDSPDAIAADVRRIIDTASTT

Sequences:

>Translated_211_residues
MSSARPAPHRRLSRLIRTAAALAAAVALTACTHDEPRWNLTNVTGHLPDLSFKLTGGDGHPVDADAFRGRVALVYFGYTH
CPDVCPETLARLMEVLAKLGPRADDVRILFVSVDPARDTPQAMQSYVAAFDAAHARGLTGTDGQIESLAKRYRVAYQMEK
RDPSGGYEVTHSSAVYIFDATGRARLLATDRDSPDAIAADVRRIIDTASTT
>Mature_210_residues
SSARPAPHRRLSRLIRTAAALAAAVALTACTHDEPRWNLTNVTGHLPDLSFKLTGGDGHPVDADAFRGRVALVYFGYTHC
PDVCPETLARLMEVLAKLGPRADDVRILFVSVDPARDTPQAMQSYVAAFDAAHARGLTGTDGQIESLAKRYRVAYQMEKR
DPSGGYEVTHSSAVYIFDATGRARLLATDRDSPDAIAADVRRIIDTASTT

Specific function: Unknown

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SCO1/2 family [H]

Homologues:

Organism=Homo sapiens, GI281182727, Length=158, Percent_Identity=37.3417721518987, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI281182722, Length=158, Percent_Identity=37.3417721518987, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI281182716, Length=158, Percent_Identity=37.3417721518987, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI153791313, Length=158, Percent_Identity=37.3417721518987, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI4759068, Length=133, Percent_Identity=36.8421052631579, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI17531419, Length=137, Percent_Identity=32.1167883211679, Blast_Score=89, Evalue=1e-18,
Organism=Saccharomyces cerevisiae, GI6319498, Length=135, Percent_Identity=39.2592592592593, Blast_Score=108, Evalue=8e-25,
Organism=Saccharomyces cerevisiae, GI6319511, Length=134, Percent_Identity=32.089552238806, Blast_Score=83, Evalue=4e-17,
Organism=Drosophila melanogaster, GI19920710, Length=152, Percent_Identity=32.2368421052632, Blast_Score=94, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22851; Mature: 22720

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSARPAPHRRLSRLIRTAAALAAAVALTACTHDEPRWNLTNVTGHLPDLSFKLTGGDGH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEECCCCC
PVDADAFRGRVALVYFGYTHCPDVCPETLARLMEVLAKLGPRADDVRILFVSVDPARDTP
CCCHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCH
QAMQSYVAAFDAAHARGLTGTDGQIESLAKRYRVAYQMEKRDPSGGYEVTHSSAVYIFDA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEEC
TGRARLLATDRDSPDAIAADVRRIIDTASTT
CCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SSARPAPHRRLSRLIRTAAALAAAVALTACTHDEPRWNLTNVTGHLPDLSFKLTGGDGH
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEECCCCC
PVDADAFRGRVALVYFGYTHCPDVCPETLARLMEVLAKLGPRADDVRILFVSVDPARDTP
CCCHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCH
QAMQSYVAAFDAAHARGLTGTDGQIESLAKRYRVAYQMEKRDPSGGYEVTHSSAVYIFDA
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEEC
TGRARLLATDRDSPDAIAADVRRIIDTASTT
CCCEEEEEECCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]