| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116689176
Identifier: 116689176
GI number: 116689176
Start: 1264839
End: 1265708
Strand: Reverse
Name: 116689176
Synonym: Bcen2424_1154
Alternate gene names: NA
Gene position: 1265708-1264839 (Counterclockwise)
Preceding gene: 116689177
Following gene: 116689173
Centisome position: 36.33
GC content: 68.16
Gene sequence:
>870_bases ATGAATCTCCTGTACTGGCTCGATCCGTGGGAGCCGTCGCCGACCGTGGTCGTCGCGGTGCTGACGGCCGCCGTGCTGTT CGCACGCGGCGTGAAGAAGGCGAAGGTGTCGCCGCTGCGGCAGTTCTCGTTCTGGTTCGGGCTGACGGCGCTCTACATCG CGCTGCATACGCGGCTCGACTATTTCTTCGAGCACGAATTCTTCATGCACCGCGCGCAGCACCTCGTGCTGCATCACCTC GGGCCGTTCTTCATCGCACTGTCCTATCCGGGCGCGGCGATCCGCGCGGGCATTCCGTTCAGCTGGCGGCAGCGCTTCGT GCGCCCCGCGCTCGCGTGGGCGCCGGTGCGCGCGACCCTCGACGTGGTATTTCATCCGGTCGTCGCGGTCGTGCTGTTCG TCGGGCTGATCTATTTCTGGCTGCTGTCGCCGATCCACTTCATCGCGATGCTCGACTGGCGTCTCTATCGCGTGATGAAC TGGAGCATGGTGATCGACGGGCTGCTGTTCTGGTGGCTCGTCGTCGATCCGCGTCCCGCGCCGCCCGCGCGGCTGTCGCC GGGCCGCCGGATTCTGATCGTCGTCGCGGCGATCCCGCCGCAGATCGCGCTCGGCGCGCTGATCTTCTTCACGCCGCACG AGCTGTATCCGATCTACTCGATCTGCGGCCGCGCGTTCACGTGGCTGAGCCCGCTGCGCGACCAGCAGATCGGCGGCCTG CTGCTGTGGATTCCCGGCTCGATGATGAGCGTGATCGGCGCGCTGATCGCGCTGCGGCACTGGCTGCGGTTGTCCGCCCG CGGGCGCCTGATCGGCGAGCGGGCCGCGCAGCGCACGGACGAGCCGCCCGTCGCACGCGCCGCGCACTGA
Upstream 100 bases:
>100_bases GGCGACACCGTGCACCTGCGCCTGAAATTCTCCGACGGCGAGACGGTCGATGCGCCATTCGCCGTGAAATCGCCGGCCCA GGCGAAGTGATGCGCGCGCG
Downstream 100 bases:
>100_bases TTGCCGCGCGGCGCGGCGCGCATCACGCGCGCGCGCTGCTCATCCATACGTGCGGGATGCCATCCTCGTCGTGCACGTCC GAACTCGGCGTGAAGCCGAA
Product: membrane protein
Products: NA
Alternate protein names: Cytochrome C Oxidase Caa3 Assembly Factor Family Protein
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MNLLYWLDPWEPSPTVVVAVLTAAVLFARGVKKAKVSPLRQFSFWFGLTALYIALHTRLDYFFEHEFFMHRAQHLVLHHL GPFFIALSYPGAAIRAGIPFSWRQRFVRPALAWAPVRATLDVVFHPVVAVVLFVGLIYFWLLSPIHFIAMLDWRLYRVMN WSMVIDGLLFWWLVVDPRPAPPARLSPGRRILIVVAAIPPQIALGALIFFTPHELYPIYSICGRAFTWLSPLRDQQIGGL LLWIPGSMMSVIGALIALRHWLRLSARGRLIGERAAQRTDEPPVARAAH
Sequences:
>Translated_289_residues MNLLYWLDPWEPSPTVVVAVLTAAVLFARGVKKAKVSPLRQFSFWFGLTALYIALHTRLDYFFEHEFFMHRAQHLVLHHL GPFFIALSYPGAAIRAGIPFSWRQRFVRPALAWAPVRATLDVVFHPVVAVVLFVGLIYFWLLSPIHFIAMLDWRLYRVMN WSMVIDGLLFWWLVVDPRPAPPARLSPGRRILIVVAAIPPQIALGALIFFTPHELYPIYSICGRAFTWLSPLRDQQIGGL LLWIPGSMMSVIGALIALRHWLRLSARGRLIGERAAQRTDEPPVARAAH >Mature_289_residues MNLLYWLDPWEPSPTVVVAVLTAAVLFARGVKKAKVSPLRQFSFWFGLTALYIALHTRLDYFFEHEFFMHRAQHLVLHHL GPFFIALSYPGAAIRAGIPFSWRQRFVRPALAWAPVRATLDVVFHPVVAVVLFVGLIYFWLLSPIHFIAMLDWRLYRVMN WSMVIDGLLFWWLVVDPRPAPPARLSPGRRILIVVAAIPPQIALGALIFFTPHELYPIYSICGRAFTWLSPLRDQQIGGL LLWIPGSMMSVIGALIALRHWLRLSARGRLIGERAAQRTDEPPVARAAH
Specific function: Unknown
COG id: COG3336
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32970; Mature: 32970
Theoretical pI: Translated: 11.26; Mature: 11.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLLYWLDPWEPSPTVVVAVLTAAVLFARGVKKAKVSPLRQFSFWFGLTALYIALHTRLD CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YFFEHEFFMHRAQHLVLHHLGPFFIALSYPGAAIRAGIPFSWRQRFVRPALAWAPVRATL HHHHHHHHHHHHHHHHHHHCCHHEEEEECCCHHEECCCCHHHHHHHHHHHHHHHHHHHHH DVVFHPVVAVVLFVGLIYFWLLSPIHFIAMLDWRLYRVMNWSMVIDGLLFWWLVVDPRPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC PPARLSPGRRILIVVAAIPPQIALGALIFFTPHELYPIYSICGRAFTWLSPLRDQQIGGL CCCCCCCCCEEEEEEECCCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCE LLWIPGSMMSVIGALIALRHWLRLSARGRLIGERAAQRTDEPPVARAAH EEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MNLLYWLDPWEPSPTVVVAVLTAAVLFARGVKKAKVSPLRQFSFWFGLTALYIALHTRLD CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH YFFEHEFFMHRAQHLVLHHLGPFFIALSYPGAAIRAGIPFSWRQRFVRPALAWAPVRATL HHHHHHHHHHHHHHHHHHHCCHHEEEEECCCHHEECCCCHHHHHHHHHHHHHHHHHHHHH DVVFHPVVAVVLFVGLIYFWLLSPIHFIAMLDWRLYRVMNWSMVIDGLLFWWLVVDPRPA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC PPARLSPGRRILIVVAAIPPQIALGALIFFTPHELYPIYSICGRAFTWLSPLRDQQIGGL CCCCCCCCCEEEEEEECCCCHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCE LLWIPGSMMSVIGALIALRHWLRLSARGRLIGERAAQRTDEPPVARAAH EEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA