Click here to switch to the map view.

The map label for this gene is ytsP [H]

Identifier: 116689172

GI number: 116689172

Start: 1261661

End: 1262164

Strand: Reverse

Name: ytsP [H]

Synonym: Bcen2424_1150

Alternate gene names: 116689172

Gene position: 1262164-1261661 (Counterclockwise)

Preceding gene: 116689173

Following gene: 116689169

Centisome position: 36.23

GC content: 67.86

Gene sequence:

>504_bases
ATGTTCACGCTGTCCAACGACCCTACCGCCTCCAAGGCCGATCAATACGCGACGCTCGTCGAGCAGGCACGTGCGCTCGT
CGAATCCGAACGCGACCTGACCGCGAACGCCGCGAATTTCTCCGCGCTCGTCTATCACTCGCTCGATCGCCTGAACTGGG
CCGGCTTCTACTTCTTCGACGGCACCGAGCTCGTGGTCGGGCCGTTCCAGGGCAAGCCCGCGTGCGTGCGGATCGCGCTC
GGCAAGGGCGTGTGCGGCACGGCCGCGCAGACCCGCGAGACGCAGGTCGTGCGCGACGTGCACGACTTCCCCGGCCATAT
CGCGTGCGATGCGGCGTCGGAATCGGAAATCGTCGTGCCGCTGGTGGCCGACGACGGCACGCTGATCGGCGTGTGGGACG
TCGACAGCCCGGTCGCCGCGCGCTTCGACGACGAGGACCGCAAAGGGATGGAGGCGCTGTGCCGCGTGTTCGTCGAGCAC
GCGTGGCAGAAGGCGCGCGGTTAA

Upstream 100 bases:

>100_bases
GCGCGACCACGCGCTGCAGACCACGCACGGGTGCCGTAGACTGCGGTACGCGCAGTGCGCCTTCAGTGCGCCTTTTTGAC
AACCCTATCGCTTTCCCGCC

Downstream 100 bases:

>100_bases
GCGCCGCTGCGCCGTGTCGTTCGCGGCGCCGGCCGCCGCAAACGGCACGGGCCCCGCGAAGGGGCCCGTTTCATTGCAAC
GCCGCGCCGCCGCGCGCGGC

Product: putative GAF sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MFTLSNDPTASKADQYATLVEQARALVESERDLTANAANFSALVYHSLDRLNWAGFYFFDGTELVVGPFQGKPACVRIAL
GKGVCGTAAQTRETQVVRDVHDFPGHIACDAASESEIVVPLVADDGTLIGVWDVDSPVAARFDDEDRKGMEALCRVFVEH
AWQKARG

Sequences:

>Translated_167_residues
MFTLSNDPTASKADQYATLVEQARALVESERDLTANAANFSALVYHSLDRLNWAGFYFFDGTELVVGPFQGKPACVRIAL
GKGVCGTAAQTRETQVVRDVHDFPGHIACDAASESEIVVPLVADDGTLIGVWDVDSPVAARFDDEDRKGMEALCRVFVEH
AWQKARG
>Mature_167_residues
MFTLSNDPTASKADQYATLVEQARALVESERDLTANAANFSALVYHSLDRLNWAGFYFFDGTELVVGPFQGKPACVRIAL
GKGVCGTAAQTRETQVVRDVHDFPGHIACDAASESEIVVPLVADDGTLIGVWDVDSPVAARFDDEDRKGMEALCRVFVEH
AWQKARG

Specific function: Unknown

COG id: COG1956

COG function: function code T; GAF domain-containing protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the free Met sulfoxide reductase family [H]

Homologues:

Organism=Escherichia coli, GI171474009, Length=143, Percent_Identity=53.1468531468531, Blast_Score=151, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6322781, Length=154, Percent_Identity=42.8571428571429, Blast_Score=135, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003018
- InterPro:   IPR000614 [H]

Pfam domain/function: PF01590 GAF [H]

EC number: NA

Molecular weight: Translated: 18163; Mature: 18163

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: PS01320 UPF0067

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTLSNDPTASKADQYATLVEQARALVESERDLTANAANFSALVYHSLDRLNWAGFYFFD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
GTELVVGPFQGKPACVRIALGKGVCGTAAQTRETQVVRDVHDFPGHIACDAASESEIVVP
CCEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEE
LVADDGTLIGVWDVDSPVAARFDDEDRKGMEALCRVFVEHAWQKARG
EEECCCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFTLSNDPTASKADQYATLVEQARALVESERDLTANAANFSALVYHSLDRLNWAGFYFFD
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEC
GTELVVGPFQGKPACVRIALGKGVCGTAAQTRETQVVRDVHDFPGHIACDAASESEIVVP
CCEEEEECCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEE
LVADDGTLIGVWDVDSPVAARFDDEDRKGMEALCRVFVEHAWQKARG
EEECCCCEEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]