Definition Burkholderia cenocepacia HI2424 chromosome 1, complete sequence.
Accession NC_008542
Length 3,483,902

Click here to switch to the map view.

The map label for this gene is 116689117

Identifier: 116689117

GI number: 116689117

Start: 1206669

End: 1207451

Strand: Reverse

Name: 116689117

Synonym: Bcen2424_1094

Alternate gene names: NA

Gene position: 1207451-1206669 (Counterclockwise)

Preceding gene: 116689118

Following gene: 116689115

Centisome position: 34.66

GC content: 66.92

Gene sequence:

>783_bases
ATGGGCCAGATCACCCTTTCCCTCAAGGACGACACGCTCGAGTCCCTGCGCAAGGACTACGACGCGTTCGTCCGCGTGTC
GCTGAAACTCGACCCGCAATTCGCGACGCCGTCGTTCGAGGATTTCCTGCGCGCCAAGCTGCTCGACAACATGGTGCCGC
TCACCGAGCACGCCGTGCAGCGGATGCTGCAGGGCGGCCAGTACGCGTGGGCCAAGCGCACGCTCGACAAGGAATTTCCG
GACGTCGTCGCGATCCTGATGCGGCAGGCCGGCGAATTCGGCTTCGGCTTCGCGTCGCGCTCCGAATGGACGCCCGACGA
ACTCGCGAAGGCGTGCCGCGACTGGGCGAAGGCGATCGTCGCCGAAGCGCAGGGCGATGCGTCGCTGATCGACCCGCTCG
CGTCGCAGATCAAGGGCGCCGCGCAGGACATCCAGACGCTCGAGGAACTGATGCAGACGCCTGCGTGGCGGCTCGCGGAA
TCGCTGCGACAGCGGATCTACGAGGCCAAGCTCGCGTGCGAGATGAGCGTCGGCAGCATTGCCCGCGACAAGCTCGGCGA
ACTGCGCGGACTGCTGCGGCTCGGGCTCGCGCACGGCTCGTTCCAGAAGCAGGAAGCGCAGCAGATCATGGAATACCTGC
GGCTGCTGAAGCCGGAGATCTTCGTCGAGGAACCGTACGACGTCTTCGCGCGGCTCGCCGCATGGCTGCGCAGCGTGTTC
ACCCCTGCTGCCGTGCGGCCGCCGCAGGGGCAGGGACAAGGGCAAGGACAACGCCGGCCGTAA

Upstream 100 bases:

>100_bases
ACCCGCCACCGGCCCCGGCGCGCACCGGTCAGTCGACGCTGCGCCCGCCCCGGTGCGCCGTGCCGACGCCGGCTTGCGCG
GGCCCCCCTCGAGACGATTC

Downstream 100 bases:

>100_bases
GCACGCGTCCCGCTGAACGCATCACCTGATGAAAATGGCCCGGTTCGCGCGAAGCGAACCGGGCCGCCGGATGATCGCCC
GTCGCGACGCGCCGTCCGAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MGQITLSLKDDTLESLRKDYDAFVRVSLKLDPQFATPSFEDFLRAKLLDNMVPLTEHAVQRMLQGGQYAWAKRTLDKEFP
DVVAILMRQAGEFGFGFASRSEWTPDELAKACRDWAKAIVAEAQGDASLIDPLASQIKGAAQDIQTLEELMQTPAWRLAE
SLRQRIYEAKLACEMSVGSIARDKLGELRGLLRLGLAHGSFQKQEAQQIMEYLRLLKPEIFVEEPYDVFARLAAWLRSVF
TPAAVRPPQGQGQGQGQRRP

Sequences:

>Translated_260_residues
MGQITLSLKDDTLESLRKDYDAFVRVSLKLDPQFATPSFEDFLRAKLLDNMVPLTEHAVQRMLQGGQYAWAKRTLDKEFP
DVVAILMRQAGEFGFGFASRSEWTPDELAKACRDWAKAIVAEAQGDASLIDPLASQIKGAAQDIQTLEELMQTPAWRLAE
SLRQRIYEAKLACEMSVGSIARDKLGELRGLLRLGLAHGSFQKQEAQQIMEYLRLLKPEIFVEEPYDVFARLAAWLRSVF
TPAAVRPPQGQGQGQGQRRP
>Mature_259_residues
GQITLSLKDDTLESLRKDYDAFVRVSLKLDPQFATPSFEDFLRAKLLDNMVPLTEHAVQRMLQGGQYAWAKRTLDKEFPD
VVAILMRQAGEFGFGFASRSEWTPDELAKACRDWAKAIVAEAQGDASLIDPLASQIKGAAQDIQTLEELMQTPAWRLAES
LRQRIYEAKLACEMSVGSIARDKLGELRGLLRLGLAHGSFQKQEAQQIMEYLRLLKPEIFVEEPYDVFARLAAWLRSVFT
PAAVRPPQGQGQGQGQRRP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29240; Mature: 29109

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQITLSLKDDTLESLRKDYDAFVRVSLKLDPQFATPSFEDFLRAKLLDNMVPLTEHAVQ
CCEEEEEECHHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
RMLQGGQYAWAKRTLDKEFPDVVAILMRQAGEFGFGFASRSEWTPDELAKACRDWAKAIV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AEAQGDASLIDPLASQIKGAAQDIQTLEELMQTPAWRLAESLRQRIYEAKLACEMSVGSI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARDKLGELRGLLRLGLAHGSFQKQEAQQIMEYLRLLKPEIFVEEPYDVFARLAAWLRSVF
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHH
TPAAVRPPQGQGQGQGQRRP
CCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
GQITLSLKDDTLESLRKDYDAFVRVSLKLDPQFATPSFEDFLRAKLLDNMVPLTEHAVQ
CEEEEEECHHHHHHHHHHHHHHEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
RMLQGGQYAWAKRTLDKEFPDVVAILMRQAGEFGFGFASRSEWTPDELAKACRDWAKAIV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AEAQGDASLIDPLASQIKGAAQDIQTLEELMQTPAWRLAESLRQRIYEAKLACEMSVGSI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ARDKLGELRGLLRLGLAHGSFQKQEAQQIMEYLRLLKPEIFVEEPYDVFARLAAWLRSVF
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHH
TPAAVRPPQGQGQGQGQRRP
CCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA