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The map label for this gene is yncD [C]

Identifier: 116689033

GI number: 116689033

Start: 1115951

End: 1118323

Strand: Direct

Name: yncD [C]

Synonym: Bcen2424_1010

Alternate gene names: 116689033

Gene position: 1115951-1118323 (Clockwise)

Preceding gene: 116689032

Following gene: 116689034

Centisome position: 32.03

GC content: 68.14

Gene sequence:

>2373_bases
ATGTCGTTCACCTTTGCCGCGCGGCCCTCGCGCGGCCGGCTCGCGCTCGCCTGCGCGGCCGCTTTCGCATGGCCGGCCGC
TTACGCGGCTGCCACCGACGATGTCCGCGCCGGGACCGCCCGCGGCGGTGGCGTCGATCGTCCCCCGACCACTGCGACCG
CCGCGCCGGCTGCCGCCGGCGTCGCGGCAGCGTCCGCACCGGCCGGCGATACGCTGAGCGCCGTCAGCGTGACCGCGCAG
CGGCAACCGGTCGACCCGGATACGCCGGCCGTCGTCACGTCAATTACGCGCGAGCAGATCGATGCGCATACCAACGTCAC
CACCGAGGACGCGCTGAAGTACGCGCCGAACCTGATGGTCCGCAAGCGCTACATCGGTGACCGCAACAGCATATTCGCGG
GTCGCGACTTCAACGAACTGCAGAGCGCGCGCGGGCTCGTCTATGCGGACGGCGTGTTGCTGTCGAACCTGCTCGGGTCG
AGCTATGCATACCCGCCGCGCTGGTCGCTGATTCCGCCCGACGACATCGCGCGCGTCGACGTGCTCTATGGCCCTTTTTC
CGCGCTCTATCCGGGCAACGCGATCGGCTCCACTGTGCTGCTCACCACGCGCCGCCCGGAACAACTCGAGGCGTCGCTGT
CGACGCAGTTCTTTACGCAGCGCTACCACGACGGCTACGGCTTTGCCGACAGCTTCGGCGGCAATCACCAGACGGCGCGG
ATCGCGAACCGCGTCGGCCGGTTCTGGTTCGCGTTGTCGCTCGACCGGCTGGAGAACAACGGCCAGCCGATGCAGTACGC
GGGCCCCAATTCGACCTACAACCCGAAACTGGGCGCCGCCGTGCCGGTGACGGGCGCCGCGACCGACATCGGCCCCAACG
GCAAGCCGCGGACCATCGTCGGCGCGCAGACGATCGAGCGGACCGAACAGCTCAACGAGACGGTCCGGATGGGCTATGCG
TTCACCGATCACGTCGATGCGACGCTGACGCTGGGGCATTGGGAGAACCATTACCGGCAGCACGGCGAGACCTTCCTGCG
AGATGCGGCGGGCAATCCCGTCTACGGCGGCAACGTGTCGATCGGCGGCCAGAACATGACGGTCGCGCCGAACGCGTTCG
CGCCGCAGCGCGGCGACCAGGAGAACTGGCTGTACGCGCTCGGGTTGAACGGCCGGCTCGATTCCGGCTGGCGGCTGTCA
GGCGTCGTGTCGGCGTACGACGTGTCGCGCGACGTGCTGCGCGCGGCCTCGACCGTGCAGGGTGGGGCGGGCACGCTGTT
CCAGGGCGACGGCACCGGCTGGCGCACGCTCGATCTGAAGGCCGAGGCGCCGGTAGTGAAAGGTCATACGTTCACGTTCG
GCTATCACTACGACAACTACTTCCTGCGCAACGTCACGTACAACACGGCCGACTGGCTGGCCGGCCCGACCACGTCGCTC
GCGAGCGTCTATCGCGGCGACACGCGCACGCAGGCGCTGTTCGGGCAGGACGCGTGGCGTTTCGCGCCGCGCTGGCTCGC
GACGCTCGGGCTGCGCTACGAGCGCTGGGATGCGTATGGCGGCGCGCTCGGCAATGCGCGCGGCACGCTCGGCTATGCGG
ACCGCGGCGCGAACGCGCTGTCGCCGAAAGTCGCGCTGCAGTGGGACGCGACGGAGGTCTGGCGCTTCCGGCTGTCGTTC
GCGACCGGCACGCGGTTCCCGACGGTCGGCGAATTGTTCCAGGGCACGATCTCGAACAACGCGATCGTCAACAACAACCC
GAACCTGCGGCCGGAGAAGGCGATCGACTGGGACTTCACGGCCGAACGCGACGTGGGCGTCGGCGTCGTGCGCGCCAGCG
TATTCCAGAGCGATCTGCGCGACTCGATCTACAGCCAGACGACGGTGTCGGGCGCGACCACCGTCACCAACATCTCGAAC
GTCGACCGCGTGCGCGTGCGCGGCGTCGAACTCGCGTTCAGCGGCGAGAACGTCGGGGTGCGTGGGCTCGATCTCGACGC
GAACGTATCGGCGAGCAACGCGCAGATCCTCGCCGATGCCGCGAACCCGGCCTACGTCGGTTCGCGTTTCCCGCGCATTC
CTCGCATGCGCGCGAACCTGCTCGCGTCGTATCGCTTCGACGAGCACTGGCTCACGAGCGTCGGCGTGCGCTACTCGGGC
CGCCAGTTCAACACGCTCGACAACAGCGACGTGAATCCGGACGTCTACGGCGGCACGAGTTCGTTCACGGTCGTCGATCT
GAAGGCGCGCTATCGCTTCGATCGTCACTGGACCGCGTCGGCCGGCATCGACAACGTGACGGACCGCCGCTACTACACGT
TCCACCCGTATCCGGGCCGCACGTTCTATGGAGAACTGAAATGGTCGCTGTGA

Upstream 100 bases:

>100_bases
CGCGAGCCGCCCGCGGCCCCGGTCCGCGCGTCGCGCCGTTCGTGCGCGGCTTGCGCCCCTGTGTCCGGCGGCGTCCGATC
ACGTTTTCAGGAACTCACTC

Downstream 100 bases:

>100_bases
AATCGAGGCCGCGGGCGGCGCTCGTTGCGGGATGGCGAGGGGCGATGTCGCGCCCCGTGTGGATCGGTCGCGATGGCGTG
CATGAAGCGCGCAGCGGATT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Protein; Nb-Dependent Receptor; NB-Dependent Siderophore Receptor; NB Dependent Receptor; Outer Membrane Receptor Family Protein; NB-Dependent Receptor Plug; Outer Membrane Receptor Protein; Vitamin; Outer Membrane Receptor; Exogenous Ferric Siderophore Receptor; NB-Dependent Haemoglobin/Transferrin/Lactoferrin Receptor; Exogenous Ferric Siderophore nB-Dependent Receptor; NB-Dependent Outer Membrane Heme Receptor; NB-Dependent Receptor Domain Protein; Fe Transport Outer Membrane Receptor Protein; Ferrisiderophore Receptor Protein

Number of amino acids: Translated: 790; Mature: 789

Protein sequence:

>790_residues
MSFTFAARPSRGRLALACAAAFAWPAAYAAATDDVRAGTARGGGVDRPPTTATAAPAAAGVAAASAPAGDTLSAVSVTAQ
RQPVDPDTPAVVTSITREQIDAHTNVTTEDALKYAPNLMVRKRYIGDRNSIFAGRDFNELQSARGLVYADGVLLSNLLGS
SYAYPPRWSLIPPDDIARVDVLYGPFSALYPGNAIGSTVLLTTRRPEQLEASLSTQFFTQRYHDGYGFADSFGGNHQTAR
IANRVGRFWFALSLDRLENNGQPMQYAGPNSTYNPKLGAAVPVTGAATDIGPNGKPRTIVGAQTIERTEQLNETVRMGYA
FTDHVDATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIGGQNMTVAPNAFAPQRGDQENWLYALGLNGRLDSGWRLS
GVVSAYDVSRDVLRAASTVQGGAGTLFQGDGTGWRTLDLKAEAPVVKGHTFTFGYHYDNYFLRNVTYNTADWLAGPTTSL
ASVYRGDTRTQALFGQDAWRFAPRWLATLGLRYERWDAYGGALGNARGTLGYADRGANALSPKVALQWDATEVWRFRLSF
ATGTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAERDVGVGVVRASVFQSDLRDSIYSQTTVSGATTVTNISN
VDRVRVRGVELAFSGENVGVRGLDLDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLTSVGVRYSG
RQFNTLDNSDVNPDVYGGTSSFTVVDLKARYRFDRHWTASAGIDNVTDRRYYTFHPYPGRTFYGELKWSL

Sequences:

>Translated_790_residues
MSFTFAARPSRGRLALACAAAFAWPAAYAAATDDVRAGTARGGGVDRPPTTATAAPAAAGVAAASAPAGDTLSAVSVTAQ
RQPVDPDTPAVVTSITREQIDAHTNVTTEDALKYAPNLMVRKRYIGDRNSIFAGRDFNELQSARGLVYADGVLLSNLLGS
SYAYPPRWSLIPPDDIARVDVLYGPFSALYPGNAIGSTVLLTTRRPEQLEASLSTQFFTQRYHDGYGFADSFGGNHQTAR
IANRVGRFWFALSLDRLENNGQPMQYAGPNSTYNPKLGAAVPVTGAATDIGPNGKPRTIVGAQTIERTEQLNETVRMGYA
FTDHVDATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIGGQNMTVAPNAFAPQRGDQENWLYALGLNGRLDSGWRLS
GVVSAYDVSRDVLRAASTVQGGAGTLFQGDGTGWRTLDLKAEAPVVKGHTFTFGYHYDNYFLRNVTYNTADWLAGPTTSL
ASVYRGDTRTQALFGQDAWRFAPRWLATLGLRYERWDAYGGALGNARGTLGYADRGANALSPKVALQWDATEVWRFRLSF
ATGTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAERDVGVGVVRASVFQSDLRDSIYSQTTVSGATTVTNISN
VDRVRVRGVELAFSGENVGVRGLDLDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLTSVGVRYSG
RQFNTLDNSDVNPDVYGGTSSFTVVDLKARYRFDRHWTASAGIDNVTDRRYYTFHPYPGRTFYGELKWSL
>Mature_789_residues
SFTFAARPSRGRLALACAAAFAWPAAYAAATDDVRAGTARGGGVDRPPTTATAAPAAAGVAAASAPAGDTLSAVSVTAQR
QPVDPDTPAVVTSITREQIDAHTNVTTEDALKYAPNLMVRKRYIGDRNSIFAGRDFNELQSARGLVYADGVLLSNLLGSS
YAYPPRWSLIPPDDIARVDVLYGPFSALYPGNAIGSTVLLTTRRPEQLEASLSTQFFTQRYHDGYGFADSFGGNHQTARI
ANRVGRFWFALSLDRLENNGQPMQYAGPNSTYNPKLGAAVPVTGAATDIGPNGKPRTIVGAQTIERTEQLNETVRMGYAF
TDHVDATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVSIGGQNMTVAPNAFAPQRGDQENWLYALGLNGRLDSGWRLSG
VVSAYDVSRDVLRAASTVQGGAGTLFQGDGTGWRTLDLKAEAPVVKGHTFTFGYHYDNYFLRNVTYNTADWLAGPTTSLA
SVYRGDTRTQALFGQDAWRFAPRWLATLGLRYERWDAYGGALGNARGTLGYADRGANALSPKVALQWDATEVWRFRLSFA
TGTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFTAERDVGVGVVRASVFQSDLRDSIYSQTTVSGATTVTNISNV
DRVRVRGVELAFSGENVGVRGLDLDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLTSVGVRYSGR
QFNTLDNSDVNPDVYGGTSSFTVVDLKARYRFDRHWTASAGIDNVTDRRYYTFHPYPGRTFYGELKWSL

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 85976; Mature: 85845

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTFAARPSRGRLALACAAAFAWPAAYAAATDDVRAGTARGGGVDRPPTTATAAPAAAG
CCEEECCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
VAAASAPAGDTLSAVSVTAQRQPVDPDTPAVVTSITREQIDAHTNVTTEDALKYAPNLMV
HHHCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEE
RKRYIGDRNSIFAGRDFNELQSARGLVYADGVLLSNLLGSSYAYPPRWSLIPPDDIARVD
EHHHCCCCCCEECCCCHHHHHHHCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
VLYGPFSALYPGNAIGSTVLLTTRRPEQLEASLSTQFFTQRYHDGYGFADSFGGNHQTAR
EEECCHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
IANRVGRFWFALSLDRLENNGQPMQYAGPNSTYNPKLGAAVPVTGAATDIGPNGKPRTIV
HHHHHHHEEEEEEHHHHCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEE
GAQTIERTEQLNETVRMGYAFTDHVDATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVS
CHHHHHHHHHHHHHHHHCEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEE
IGGQNMTVAPNAFAPQRGDQENWLYALGLNGRLDSGWRLSGVVSAYDVSRDVLRAASTVQ
ECCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHCC
GGAGTLFQGDGTGWRTLDLKAEAPVVKGHTFTFGYHYDNYFLRNVTYNTADWLAGPTTSL
CCCCEEEECCCCCEEEEEEECCCCEEECCEEEEEEEECCEEEEEEECCCHHHCCCCCHHH
ASVYRGDTRTQALFGQDAWRFAPRWLATLGLRYERWDAYGGALGNARGTLGYADRGANAL
HHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCEEEHHCCCCCCCCCCCCCCCCCCCCCCC
SPKVALQWDATEVWRFRLSFATGTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFT
CCCEEEEECCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
AERDVGVGVVRASVFQSDLRDSIYSQTTVSGATTVTNISNVDRVRVRGVELAFSGENVGV
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCE
RGLDLDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLTSVGVRYSG
EEECCCCCCCCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHCEEECC
RQFNTLDNSDVNPDVYGGTSSFTVVDLKARYRFDRHWTASAGIDNVTDRRYYTFHPYPGR
CEECCCCCCCCCCCCCCCCCCEEEEEEEEHEEECCCEECCCCCCCCCCCEEEEECCCCCC
TFYGELKWSL
EEEEEEEECC
>Mature Secondary Structure 
SFTFAARPSRGRLALACAAAFAWPAAYAAATDDVRAGTARGGGVDRPPTTATAAPAAAG
CEEECCCCCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
VAAASAPAGDTLSAVSVTAQRQPVDPDTPAVVTSITREQIDAHTNVTTEDALKYAPNLMV
HHHCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEE
RKRYIGDRNSIFAGRDFNELQSARGLVYADGVLLSNLLGSSYAYPPRWSLIPPDDIARVD
EHHHCCCCCCEECCCCHHHHHHHCCEEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
VLYGPFSALYPGNAIGSTVLLTTRRPEQLEASLSTQFFTQRYHDGYGFADSFGGNHQTAR
EEECCHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
IANRVGRFWFALSLDRLENNGQPMQYAGPNSTYNPKLGAAVPVTGAATDIGPNGKPRTIV
HHHHHHHEEEEEEHHHHCCCCCEEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCEEE
GAQTIERTEQLNETVRMGYAFTDHVDATLTLGHWENHYRQHGETFLRDAAGNPVYGGNVS
CHHHHHHHHHHHHHHHHCEEEECCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCEEE
IGGQNMTVAPNAFAPQRGDQENWLYALGLNGRLDSGWRLSGVVSAYDVSRDVLRAASTVQ
ECCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEEEHHHHHHHHHHHHHHCC
GGAGTLFQGDGTGWRTLDLKAEAPVVKGHTFTFGYHYDNYFLRNVTYNTADWLAGPTTSL
CCCCEEEECCCCCEEEEEEECCCCEEECCEEEEEEEECCEEEEEEECCCHHHCCCCCHHH
ASVYRGDTRTQALFGQDAWRFAPRWLATLGLRYERWDAYGGALGNARGTLGYADRGANAL
HHHHCCCCHHHHHHCCCHHHHHHHHHHHHCCCEEEHHCCCCCCCCCCCCCCCCCCCCCCC
SPKVALQWDATEVWRFRLSFATGTRFPTVGELFQGTISNNAIVNNNPNLRPEKAIDWDFT
CCCEEEEECCCEEEEEEEEEECCCCCCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC
AERDVGVGVVRASVFQSDLRDSIYSQTTVSGATTVTNISNVDRVRVRGVELAFSGENVGV
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEEEEEEECCCCCCE
RGLDLDANVSASNAQILADAANPAYVGSRFPRIPRMRANLLASYRFDEHWLTSVGVRYSG
EEECCCCCCCCCCCEEEEECCCCCHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHCEEECC
RQFNTLDNSDVNPDVYGGTSSFTVVDLKARYRFDRHWTASAGIDNVTDRRYYTFHPYPGR
CEECCCCCCCCCCCCCCCCCCEEEEEEEEHEEECCCEECCCCCCCCCCCEEEEECCCCCC
TFYGELKWSL
EEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA