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The map label for this gene is rfaC [H]

Identifier: 116689012

GI number: 116689012

Start: 1096971

End: 1097969

Strand: Direct

Name: rfaC [H]

Synonym: Bcen2424_0989

Alternate gene names: 116689012

Gene position: 1096971-1097969 (Clockwise)

Preceding gene: 116689010

Following gene: 116689021

Centisome position: 31.49

GC content: 70.07

Gene sequence:

>999_bases
GTGAAACGCATCCTTATCGTGAAAGTGACGTCGCTCGGCGACGTCGTCCAGACGCTGCCCGTCGTCGCCGACCTGCATCG
CGCGTTCCCCGGCGTGACCGTCGACTGGGCCGTGGACGAATCGTGCGCGGAGGTCGTACGCTGGCATCCGGGTGTGAGCG
CCGTCCTGGGCGCGCCGCTGCGCCGCTTCAAGAAACTGCGCAATGCCGGCGACCTGAAGGCGATCTCGGCCTCGATCGGC
GCGTTGCGCGCGCACCGGTACGACGCGGTCATCGATCTGCACGGTGTCTACAAGAGCGCGATCATTGCGTCGCTCGCGCG
TGCCGCGCGCCGTTTCGGCTACCAGACGCAGGATCTCGGCGAAACGGGCGCGCGTTTCGCGTATTCGCACCGCTTCGGTC
CGCGGCCGGACTGCGACGCATGGCACGGGATGCGTGTGAGTGCCGGCGAGGCGCTCGGCTACGTGCCCGAAGGGGCTGCC
ACGTACGGCATCGTCGCCCCGCAGGATGCAAGCCTGCCGGCTGCCGTGACGGATGCCGGGCCTTTCATGCTGCTGTTCCA
CGCGACGTCCAATCCCGACAAGAAATGGCCGGCCGAGCACTGGGCCGCGCTTGCCACGGAGATGATGGCGCGCGGCGTGC
GCGTGCTGCTGCCGTGGGGATCGGCGGCCGAGCATGACGACGCGCGGGATATCGCCGCGCGTGTGCCGGGGGCGATCGTG
TTACCGGCGATGACGGTGCGTGAGCTCGGTGCGGCGCTTGGCCGGGCCGCGCTCGTGGTGGGCGTCGATACCGGGTTCGT
GCACATGGCGCACGCACTGCAGCGGCCGACCGTGATGATTTTCGTCGCGACGTCGCGCCACCATTGCGGCATCGGCGGCG
CGCCGCATGCGCTGTCGATCGGCGAGCCGGGCGCGATGCCGACCGTCGACGAGGCGCTGGGCGCGATCGATGCGGTCTGC
CCCGCCTATGGCACGTTGCGCGCGCGGCTGTCCGCCTGA

Upstream 100 bases:

>100_bases
CAAAGAGATGCAATTTGTTGCAAATGTAATGTTGGCGTAATTTCTGCGCACAGCAACCTCGTTAGCATGCCAAGGTGGCC
AGTCAAGAATCCCGCAAATC

Downstream 100 bases:

>100_bases
CGCGGCGCGGCGGCCGTGATCACGCGAGCAACGCCTCGACCGTGACGACGGCGGCGATGGCCGCCAGATTCGCCAGTAGC
GCCTCGAACACGAGACCGCG

Product: lipopolysaccharide heptosyltransferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVSAVLGAPLRRFKKLRNAGDLKAISASIG
ALRAHRYDAVIDLHGVYKSAIIASLARAARRFGYQTQDLGETGARFAYSHRFGPRPDCDAWHGMRVSAGEALGYVPEGAA
TYGIVAPQDASLPAAVTDAGPFMLLFHATSNPDKKWPAEHWAALATEMMARGVRVLLPWGSAAEHDDARDIAARVPGAIV
LPAMTVRELGAALGRAALVVGVDTGFVHMAHALQRPTVMIFVATSRHHCGIGGAPHALSIGEPGAMPTVDEALGAIDAVC
PAYGTLRARLSA

Sequences:

>Translated_332_residues
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVSAVLGAPLRRFKKLRNAGDLKAISASIG
ALRAHRYDAVIDLHGVYKSAIIASLARAARRFGYQTQDLGETGARFAYSHRFGPRPDCDAWHGMRVSAGEALGYVPEGAA
TYGIVAPQDASLPAAVTDAGPFMLLFHATSNPDKKWPAEHWAALATEMMARGVRVLLPWGSAAEHDDARDIAARVPGAIV
LPAMTVRELGAALGRAALVVGVDTGFVHMAHALQRPTVMIFVATSRHHCGIGGAPHALSIGEPGAMPTVDEALGAIDAVC
PAYGTLRARLSA
>Mature_332_residues
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVSAVLGAPLRRFKKLRNAGDLKAISASIG
ALRAHRYDAVIDLHGVYKSAIIASLARAARRFGYQTQDLGETGARFAYSHRFGPRPDCDAWHGMRVSAGEALGYVPEGAA
TYGIVAPQDASLPAAVTDAGPFMLLFHATSNPDKKWPAEHWAALATEMMARGVRVLLPWGSAAEHDDARDIAARVPGAIV
LPAMTVRELGAALGRAALVVGVDTGFVHMAHALQRPTVMIFVATSRHHCGIGGAPHALSIGEPGAMPTVDEALGAIDAVC
PAYGTLRARLSA

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=281, Percent_Identity=35.2313167259786, Blast_Score=168, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 35103; Mature: 35103

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVSAVLGAPL
CCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHH
RRFKKLRNAGDLKAISASIGALRAHRYDAVIDLHGVYKSAIIASLARAARRFGYQTQDLG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ETGARFAYSHRFGPRPDCDAWHGMRVSAGEALGYVPEGAATYGIVAPQDASLPAAVTDAG
HHHHHHEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEECCC
PFMLLFHATSNPDKKWPAEHWAALATEMMARGVRVLLPWGSAAEHDDARDIAARVPGAIV
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHCCCEEE
LPAMTVRELGAALGRAALVVGVDTGFVHMAHALQRPTVMIFVATSRHHCGIGGAPHALSI
EHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEC
GEPGAMPTVDEALGAIDAVCPAYGTLRARLSA
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCC
>Mature Secondary Structure
MKRILIVKVTSLGDVVQTLPVVADLHRAFPGVTVDWAVDESCAEVVRWHPGVSAVLGAPL
CCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCHHHHHHHHH
RRFKKLRNAGDLKAISASIGALRAHRYDAVIDLHGVYKSAIIASLARAARRFGYQTQDLG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHCCCCCHHHH
ETGARFAYSHRFGPRPDCDAWHGMRVSAGEALGYVPEGAATYGIVAPQDASLPAAVTDAG
HHHHHHEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEECCC
PFMLLFHATSNPDKKWPAEHWAALATEMMARGVRVLLPWGSAAEHDDARDIAARVPGAIV
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHCCCEEE
LPAMTVRELGAALGRAALVVGVDTGFVHMAHALQRPTVMIFVATSRHHCGIGGAPHALSI
EHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEC
GEPGAMPTVDEALGAIDAVCPAYGTLRARLSA
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferases; Glycosyltransferases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]