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The map label for this gene is rarA [H]

Identifier: 116689000

GI number: 116689000

Start: 1086460

End: 1087770

Strand: Direct

Name: rarA [H]

Synonym: Bcen2424_0977

Alternate gene names: 116689000

Gene position: 1086460-1087770 (Clockwise)

Preceding gene: 116688999

Following gene: 116689002

Centisome position: 31.19

GC content: 66.82

Gene sequence:

>1311_bases
ATGTCCGATCTGTTTCAAGTCGAGCCGCGCCGCCCGCTCGCCGAGGCGCTGCGGCCGAAAACGCTCGCCGAGGTGATCGG
CCAGACGCATTTGCTGGGCGAAGGCAAGCCGCTGCGGCTCGCGTTCGAATCGGGCAAGCCGCATTCGATGATCCTGTGGG
GGCCGCCCGGCGTCGGCAAGACGACGCTCGCGCGGCTCACCGCGCTCGCGTTCGACTGCGAGTTCATCGCGCTGTCCGCG
GTGCTCGGCGGCGTGAAGGACATCCGCGAGTCGATGGAGCAGGCGAAGGACACGTTGAATCGTACCGGTCGCCACACGAT
CCTGTTCGTCGACGAGATCCACCGCTTCAACAAGGGGCAGCAGGATGCGCTGCTGCCGTTCGTCGAATCGGGCCTCGTGA
CCTTCATCGGCGCGACGACCGAAAACCCGAGTTTCGAGGTCAATTCGGCATTGCTGTCGCGGGCGCAGGTGTACGTGCTG
AAGTCGCTGAACGACGACGAGATGCGCCAGTTGCTGAAGCGCGCGCAGGAAATCGCGCTCGACGGCCTCGCGTTCGACGA
CAAGGCGATCGATACGCTCGTCGGCTACGCGGACGGCGACGCGCGCCGCTTCCTGAACCTGCTCGAACAGGCGCAGACGG
CGGCGACGTCGGCCGGCGTCGCGACGATCGATGCCGATTTCGTCAGCAATGCGATGACGCTGAACGCGCGGCGCTTCGAC
AAGGGCGGCGACAACTTCTACGACCAGATTTCGGCGCTGCACAAGTCGGTGCGCGGCTCGAGCCCGGACGGCGCGCTGTA
CTGGTTCTGCCGGATGATCGACGGGGGCGCGGACCCGAAGTATCTCGCGCGGCGCATCGTGCGGATGGCGTGGGAAGACA
TCGGCCTGGCCGACCCGCGCGCGTTGCAGGTGGCGAACGACGCGGCCGAAACCTACGAGCGGCTCGGCTCGCCGGAAGGC
GAACTCGCGCTCGGACAGGCCGTGATCTATCTCGCATGCGCGGCGAAGAGCAACGCCGGCTACAACGCGTTCAACCAGGC
GATGGCGTTCGTGAAGCAGGACAAGTCGCGCGAGGTGCCCGTGCATCTGCGCAACGCGCCGACCAGGCTGATGAAGGAGC
TCGGCTATGGTCACGCCTATCGTTACGCGCACGACGAGCCGAATGCGTACGCGGCCGGCGAGACGTACCTGCCGGACGGG
ATGCGCGAGCCGCGCTGGTACCAGCCGGTGCCGCGCGGGCTCGAATCGAAGATCGCCGAGAAGCTCGCCTGGCTGCGCGA
GCTCGATCGCGAGGCCGGCAAGAAGGACTGA

Upstream 100 bases:

>100_bases
GCACTGCACCCCCGGGCCCGGCGGCGCGCTCGGGCGGCTGTCATAATGTCGGGTCCGGCGGCCGGTTCGGCCGCGACCGT
TTGATGTGGAGCGAGGGTTC

Downstream 100 bases:

>100_bases
CGGCGCCGCGCGGGCCGGTTCGACTTGCGTCGCCGCTCAGGCGTCAGCGCTTGCGGGCCGGTTGCTGTTGCTTCCAGTAT
TCGAACGGCTCTTCGTGGCA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSA
VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
KSLNDDEMRQLLKRAQEIALDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSNAMTLNARRFD
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPRALQVANDAAETYERLGSPEG
ELALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVPVHLRNAPTRLMKELGYGHAYRYAHDEPNAYAAGETYLPDG
MREPRWYQPVPRGLESKIAEKLAWLRELDREAGKKD

Sequences:

>Translated_436_residues
MSDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSA
VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
KSLNDDEMRQLLKRAQEIALDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSNAMTLNARRFD
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPRALQVANDAAETYERLGSPEG
ELALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVPVHLRNAPTRLMKELGYGHAYRYAHDEPNAYAAGETYLPDG
MREPRWYQPVPRGLESKIAEKLAWLRELDREAGKKD
>Mature_435_residues
SDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSAV
LGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLK
SLNDDEMRQLLKRAQEIALDGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSNAMTLNARRFDK
GGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPRALQVANDAAETYERLGSPEGE
LALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVPVHLRNAPTRLMKELGYGHAYRYAHDEPNAYAAGETYLPDGM
REPRWYQPVPRGLESKIAEKLAWLRELDREAGKKD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=435, Percent_Identity=42.9885057471264, Blast_Score=317, Evalue=1e-86,
Organism=Homo sapiens, GI18426904, Length=435, Percent_Identity=39.0804597701149, Blast_Score=266, Evalue=4e-71,
Organism=Escherichia coli, GI1787119, Length=448, Percent_Identity=54.2410714285714, Blast_Score=459, Evalue=1e-130,
Organism=Escherichia coli, GI1786676, Length=275, Percent_Identity=29.0909090909091, Blast_Score=81, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17541988, Length=208, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=409, Percent_Identity=41.8092909535452, Blast_Score=294, Evalue=2e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48164; Mature: 48033

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCCCHHHHHCHHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCC
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLNDDEMRQLLKRAQEIAL
CHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSNAMTLNARRFD
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCHHEECHHHCC
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
ALQVANDAAETYERLGSPEGELALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCC
VHLRNAPTRLMKELGYGHAYRYAHDEPNAYAAGETYLPDGMREPRWYQPVPRGLESKIAE
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
KLAWLRELDREAGKKD
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCCHHHHHCHHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCC
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLKSLNDDEMRQLLKRAQEIAL
CHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
DGLAFDDKAIDTLVGYADGDARRFLNLLEQAQTAATSAGVATIDADFVSNAMTLNARRFD
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHCHHEECHHHCC
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
ALQVANDAAETYERLGSPEGELALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCC
VHLRNAPTRLMKELGYGHAYRYAHDEPNAYAAGETYLPDGMREPRWYQPVPRGLESKIAE
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHH
KLAWLRELDREAGKKD
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]