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The map label for this gene is ydaL [C]

Identifier: 116688996

GI number: 116688996

Start: 1080930

End: 1081709

Strand: Reverse

Name: ydaL [C]

Synonym: Bcen2424_0973

Alternate gene names: 116688996

Gene position: 1081709-1080930 (Counterclockwise)

Preceding gene: 116688997

Following gene: 116688995

Centisome position: 31.05

GC content: 71.67

Gene sequence:

>780_bases
ATGGCGAAGAACCAGCCCCATCCGAGCGATCCCGCGAAGCGGAAGATCGCTGCCCGTCCCGTGACCCCGGCGCCCGAGGC
GCCGCCGCCCGTGCCCGACGCGGCCGCGTTGCGCGGCCAGGGCCTCGCGGGCCTCGGCGCGTTGCGCAAGTCACTGCAAG
GCGAAGCCGACCGTCGCGAGCGCGCGCGCATCGAAACCGCGCAGGCCGAGCGCAAGGCGGAAGCCGACGCGAACCTGTTC
CGCAACGAAATCGGCACGATCCGGCCGCTGAACGCGCCGCCGCGCGCGTCGTCGGGCCGCATGCCGCCCGACCCGGTGCC
GAAACAGACGCAGCGCGACGAGGAAGCCGTGCTGAACGCGACACTGTCCGACGAATTCGATCCCGAGACGCTGCTCGACA
GCGACGACTCGCTGTATTACCACCGCCCCGGCATCAGCCGCGACGTCGTGCGCAAGCTGCGTAGCGGCGCGTGGATCGTG
CAGGCGCAGATCGACCTGCACGGCATGCGGCGCGACGAAGCGCGCGATGCGCTCGCCGAATTCATCCGCGAAGCCGGCAA
GAAAGGGCTGCGCTGCCTGCGCGTGATTCACGGCAAGGGGCTCGGCTCGATCGGCAAGGAACCGGTGCTGAAGGGCAAGG
TGCGCGCGTGGCTCGTGCAGAAAGAGGAAGTGATCGCGTTCTGCGAGGCGCGCGGCCACGACGGCGGCGCGGGCGCGGTG
CTCGTGCTGCTGCAGCCGCACGCGGCACCGGCCGACCGGGGGCCGCGTGCCGCATCCTAG

Upstream 100 bases:

>100_bases
GTCCGCTGCCGCGAAGCAGGCTCGACCGGAAAGCCGCTGCCGCCGCGCAGCGGCTTTTTTTTGCCCGCGCGCCCGAACGC
GCCTGCCCCGTTACCGAATC

Downstream 100 bases:

>100_bases
GCTGACGCTCGCGATCGCGATACTGGAGGCGATCGCCACGCTGGCTTTCGCGATTTCGGGGTTCATCGAGGCGCGCAAGA
ACCGCCTCGACTCGGTCGGC

Product: Smr protein/MutS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MAKNQPHPSDPAKRKIAARPVTPAPEAPPPVPDAAALRGQGLAGLGALRKSLQGEADRRERARIETAQAERKAEADANLF
RNEIGTIRPLNAPPRASSGRMPPDPVPKQTQRDEEAVLNATLSDEFDPETLLDSDDSLYYHRPGISRDVVRKLRSGAWIV
QAQIDLHGMRRDEARDALAEFIREAGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQKEEVIAFCEARGHDGGAGAV
LVLLQPHAAPADRGPRAAS

Sequences:

>Translated_259_residues
MAKNQPHPSDPAKRKIAARPVTPAPEAPPPVPDAAALRGQGLAGLGALRKSLQGEADRRERARIETAQAERKAEADANLF
RNEIGTIRPLNAPPRASSGRMPPDPVPKQTQRDEEAVLNATLSDEFDPETLLDSDDSLYYHRPGISRDVVRKLRSGAWIV
QAQIDLHGMRRDEARDALAEFIREAGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQKEEVIAFCEARGHDGGAGAV
LVLLQPHAAPADRGPRAAS
>Mature_258_residues
AKNQPHPSDPAKRKIAARPVTPAPEAPPPVPDAAALRGQGLAGLGALRKSLQGEADRRERARIETAQAERKAEADANLFR
NEIGTIRPLNAPPRASSGRMPPDPVPKQTQRDEEAVLNATLSDEFDPETLLDSDDSLYYHRPGISRDVVRKLRSGAWIVQ
AQIDLHGMRRDEARDALAEFIREAGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQKEEVIAFCEARGHDGGAGAVL
VLLQPHAAPADRGPRAAS

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=173, Percent_Identity=30.635838150289, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788671, Length=176, Percent_Identity=30.6818181818182, Blast_Score=75, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 28018; Mature: 27887

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNQPHPSDPAKRKIAARPVTPAPEAPPPVPDAAALRGQGLAGLGALRKSLQGEADRRE
CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCHHHHH
RARIETAQAERKAEADANLFRNEIGTIRPLNAPPRASSGRMPPDPVPKQTQRDEEAVLNA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
TLSDEFDPETLLDSDDSLYYHRPGISRDVVRKLRSGAWIVQAQIDLHGMRRDEARDALAE
HHCCCCCCHHHCCCCCCEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHH
FIREAGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQKEEVIAFCEARGHDGGAGAV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LVLLQPHAAPADRGPRAAS
EEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKNQPHPSDPAKRKIAARPVTPAPEAPPPVPDAAALRGQGLAGLGALRKSLQGEADRRE
CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCHHHHH
RARIETAQAERKAEADANLFRNEIGTIRPLNAPPRASSGRMPPDPVPKQTQRDEEAVLNA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
TLSDEFDPETLLDSDDSLYYHRPGISRDVVRKLRSGAWIVQAQIDLHGMRRDEARDALAE
HHCCCCCCHHHCCCCCCEEEECCCCCHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHH
FIREAGKKGLRCLRVIHGKGLGSIGKEPVLKGKVRAWLVQKEEVIAFCEARGHDGGAGAV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE
LVLLQPHAAPADRGPRAAS
EEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA