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The map label for this gene is ribB [H]

Identifier: 116688980

GI number: 116688980

Start: 1063281

End: 1064423

Strand: Reverse

Name: ribB [H]

Synonym: Bcen2424_0957

Alternate gene names: 116688980

Gene position: 1064423-1063281 (Counterclockwise)

Preceding gene: 116688981

Following gene: 116688979

Centisome position: 30.55

GC content: 66.58

Gene sequence:

>1143_bases
ATGACGCTCGCCTCCACGCTCGACATCATCGCCGAGCTGAAAGCCGGCCGGATGGTGATCCTGGTCGACGAAGAAGACCG
CGAAAACGAGGGCGACCTCGTGATCGCCGCCGAATTCGTCACGCCGGAAGCGATCAACTTCATGGCCAAGTACGGCCGCG
GCCTGGTTTGTCTGACGTTGACGCAGGAACGCTGCAAGCAGCTTCACCTGCCGCTGATGACTTACCGCAACGGCACGCAG
TACGGCACCGCGTTCACGGTCAGCATCGAAGCGGCCGAAGGCGTGACGACCGGCATCTCGGCCGCCGACCGAGCGCACAC
GATCGCCACGGCGGTCGCGCACGACGTGCGCCCCGAGCACATCGTGCAGCCGGGCCACGTGTTCCCGATCATGGCGCAAC
CGGGCGGCGTACTCGTGCGCGCGGGCCACACCGAGGCCGGCTGCGACTTCACCGCGCTCGCGGGCCTCACGCCGGCCGCG
GTGATCTGCGAGATCATCAAGGACGACGGGACGATGGCGCGCCTGCCCGACCTGATCGAATTCGCGAAGGAACACAACCT
GAAGATCGGCACGATCGCCGATCTGATCCAGTACCGCAGCCGCACCGAATCGATCATCGAGCGGATCGCCGAGCGCACGA
TGCAGACCGCGCACGGCACGTTCCGCGCGGTGCTGTACCGCGACCAGCCGAGCGGCTCGCCGCACATCGCGCTGGTGCGC
GGCGCTCCGTCGCCCGACGTCGATACGCCGGTGCGCGTGCACGAGCCGCTGTCGGTGCTCGATCTGCTCGAGACGGGCAT
CTCGACCCACTCGTGGACGCTCGACGCCGCGATGCACGACATCGCGGAACGCGACCTCGGCGTGATCGTGCTGCTTAACT
GCGGCGATACGAAGGAACACCTGATCGACGTCTTCAAGGCGTTCGACGAGGAAGAAAGGGCTGCCGCGCTCAAGCGCCGG
CCGGTCGATTTCAAGACGTTCGGCATCGGCGCACAGATCCTGCGCGATGTCGGCGTCGGCAAGATGCAGGTGCTGTCGAA
TCCGCGCAAGCTGGGCAGCATGTCCGGCTACGGCCTCGAAGTCACGGGCTTCATTCCGATGCCCGGCGGCGAAGCCAAGT
CCTGCCCGGCGTCCCACGCGTAA

Upstream 100 bases:

>100_bases
CAGCGCTTTCCGGAGCACGCGCGGGCCCCGCGCGGCCCGCGCCAGCCGAAACGCCGTCCGGCTGGCGTAAAATACGCACT
TTCCTCTTTCTCGCCCCCTT

Downstream 100 bases:

>100_bases
CCCGCCACGGCGCTTTCGCCCTATAACCGTTCATCCACACCACGGACCAGATCATGGAAATCGGACAATACCAACCGAAT
CTCGAAGGCGACGGCCTGCG

Product: bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein

Products: NA

Alternate protein names: DHBP synthase [H]

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MTLASTLDIIAELKAGRMVILVDEEDRENEGDLVIAAEFVTPEAINFMAKYGRGLVCLTLTQERCKQLHLPLMTYRNGTQ
YGTAFTVSIEAAEGVTTGISAADRAHTIATAVAHDVRPEHIVQPGHVFPIMAQPGGVLVRAGHTEAGCDFTALAGLTPAA
VICEIIKDDGTMARLPDLIEFAKEHNLKIGTIADLIQYRSRTESIIERIAERTMQTAHGTFRAVLYRDQPSGSPHIALVR
GAPSPDVDTPVRVHEPLSVLDLLETGISTHSWTLDAAMHDIAERDLGVIVLLNCGDTKEHLIDVFKAFDEEERAAALKRR
PVDFKTFGIGAQILRDVGVGKMQVLSNPRKLGSMSGYGLEVTGFIPMPGGEAKSCPASHA

Sequences:

>Translated_380_residues
MTLASTLDIIAELKAGRMVILVDEEDRENEGDLVIAAEFVTPEAINFMAKYGRGLVCLTLTQERCKQLHLPLMTYRNGTQ
YGTAFTVSIEAAEGVTTGISAADRAHTIATAVAHDVRPEHIVQPGHVFPIMAQPGGVLVRAGHTEAGCDFTALAGLTPAA
VICEIIKDDGTMARLPDLIEFAKEHNLKIGTIADLIQYRSRTESIIERIAERTMQTAHGTFRAVLYRDQPSGSPHIALVR
GAPSPDVDTPVRVHEPLSVLDLLETGISTHSWTLDAAMHDIAERDLGVIVLLNCGDTKEHLIDVFKAFDEEERAAALKRR
PVDFKTFGIGAQILRDVGVGKMQVLSNPRKLGSMSGYGLEVTGFIPMPGGEAKSCPASHA
>Mature_379_residues
TLASTLDIIAELKAGRMVILVDEEDRENEGDLVIAAEFVTPEAINFMAKYGRGLVCLTLTQERCKQLHLPLMTYRNGTQY
GTAFTVSIEAAEGVTTGISAADRAHTIATAVAHDVRPEHIVQPGHVFPIMAQPGGVLVRAGHTEAGCDFTALAGLTPAAV
ICEIIKDDGTMARLPDLIEFAKEHNLKIGTIADLIQYRSRTESIIERIAERTMQTAHGTFRAVLYRDQPSGSPHIALVRG
APSPDVDTPVRVHEPLSVLDLLETGISTHSWTLDAAMHDIAERDLGVIVLLNCGDTKEHLIDVFKAFDEEERAAALKRRP
VDFKTFGIGAQILRDVGVGKMQVLSNPRKLGSMSGYGLEVTGFIPMPGGEAKSCPASHA

Specific function: Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate [H]

COG id: COG0108

COG function: function code H; 3,4-dihydroxy-2-butanone 4-phosphate synthase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the GTP cyclohydrolase II family [H]

Homologues:

Organism=Escherichia coli, GI1789420, Length=196, Percent_Identity=53.5714285714286, Blast_Score=223, Evalue=1e-59,
Organism=Saccharomyces cerevisiae, GI6320695, Length=202, Percent_Identity=41.5841584158416, Blast_Score=159, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR000422
- InterPro:   IPR000926
- InterPro:   IPR016299 [H]

Pfam domain/function: PF00926 DHBP_synthase; PF00925 GTP_cyclohydro2 [H]

EC number: =4.1.99.12 [H]

Molecular weight: Translated: 41063; Mature: 40931

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLASTLDIIAELKAGRMVILVDEEDRENEGDLVIAAEFVTPEAINFMAKYGRGLVCLTL
CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCEEEEEE
TQERCKQLHLPLMTYRNGTQYGTAFTVSIEAAEGVTTGISAADRAHTIATAVAHDVRPEH
CHHHHHHHCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
IVQPGHVFPIMAQPGGVLVRAGHTEAGCDFTALAGLTPAAVICEIIKDDGTMARLPDLIE
CCCCCCEEEEEECCCCEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
FAKEHNLKIGTIADLIQYRSRTESIIERIAERTMQTAHGTFRAVLYRDQPSGSPHIALVR
HHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEE
GAPSPDVDTPVRVHEPLSVLDLLETGISTHSWTLDAAMHDIAERDLGVIVLLNCGDTKEH
CCCCCCCCCCEEECCCHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCHHH
LIDVFKAFDEEERAAALKRRPVDFKTFGIGAQILRDVGVGKMQVLSNPRKLGSMSGYGLE
HHHHHHHHCHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEE
VTGFIPMPGGEAKSCPASHA
EEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
TLASTLDIIAELKAGRMVILVDEEDRENEGDLVIAAEFVTPEAINFMAKYGRGLVCLTL
CHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCEEEEEE
TQERCKQLHLPLMTYRNGTQYGTAFTVSIEAAEGVTTGISAADRAHTIATAVAHDVRPEH
CHHHHHHHCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
IVQPGHVFPIMAQPGGVLVRAGHTEAGCDFTALAGLTPAAVICEIIKDDGTMARLPDLIE
CCCCCCEEEEEECCCCEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
FAKEHNLKIGTIADLIQYRSRTESIIERIAERTMQTAHGTFRAVLYRDQPSGSPHIALVR
HHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEEE
GAPSPDVDTPVRVHEPLSVLDLLETGISTHSWTLDAAMHDIAERDLGVIVLLNCGDTKEH
CCCCCCCCCCEEECCCHHHHHHHHHCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCHHH
LIDVFKAFDEEERAAALKRRPVDFKTFGIGAQILRDVGVGKMQVLSNPRKLGSMSGYGLE
HHHHHHHHCHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCHHHHHCCCHHHCCCCCCCEE
VTGFIPMPGGEAKSCPASHA
EEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]