Click here to switch to the map view.

The map label for this gene is ubiD [H]

Identifier: 116688975

GI number: 116688975

Start: 1057607

End: 1059163

Strand: Reverse

Name: ubiD [H]

Synonym: Bcen2424_0952

Alternate gene names: 116688975

Gene position: 1059163-1057607 (Counterclockwise)

Preceding gene: 116688977

Following gene: 116688974

Centisome position: 30.4

GC content: 67.95

Gene sequence:

>1557_bases
ATGAAATACAAAGACTTACGCGATTTCATTCAGCGCCTAGAGGCGCTCGGCGAACTGCGGCGCGTCACCCAGCCCGTGTC
GCCCGTGCTCGAAATGACCGAGCTGTGCGACCGCGTGCTGCGCGCCGGCGGCCCCGCGCTGCTGTTCAACGCGCCGCCCG
GCAATGCATTTCCGGTACTCGGCAACCTGTTCGGCACGCCGCGCCGCGTCGCGCTCGGGATGGGCGTCGATGCGGGCGAC
GATGCCGCGCTCGGCTCGCTGCGCGATCTCGGACGCCTGCTGTCCGCACTGAAGGAGCCCGATCCGCCGAAGAGCCTGAA
GGACGCCGGCAAGCTGCTGTCGCTCGCGAAGGCGGTGTGGGACATGGCGCCGAAGTCGGTGTCGTCGCCGCCGTGCCAGG
AGATCGTCTGGGAAGGCGCCGACGTCGACCTGAACAAGCTGCCGATCCAGACCTGCTGGCCCGGCGATGCGGGGCCGCTC
GTCACGTGGGGCCTGACGGTCACGCGTGGGCCGAACAAGTCGCGCCAGAATCTCGGCATCTACCGCCAGCAGCTGATCGG
CCGCAACAAGCTGATCATGCGCTGGCTCGCGCATCGCGGCGGCGCGCTGGATTTCCGCGAATTCGCGCTGCAGAACCCCG
GCAAGCCGTATCCGGTCGCGGTCGTGCTCGGCGCCGATCCGGCCACGACGCTCGGCGCGGTGACGCCCGTGCCTGATTCG
CTGTCCGAGTACCAGTTCGCCGGCCTGCTGCGCGGCAGCCGCACGGAACTCGCGAAGTGCCTGACGCCCGGCGTCGACAC
GCTGCAGGTGCCCGCGCGCGCGGAGATCGTGCTCGAAGGCTTCATTCATCCGCAGGAAGGCGCCCCTGCCCCCGCTCCGG
CCGGCGCGCCGCCGCGACCGGCGGGCAACGCGGCGGCCGCGTACGAACACGCGCTCGAAGGGCCGTACGGCGACCACACT
GGTTATTACAACGAGCAGGAGTGGTTTCCGGTGTTCACCGTCGAGCGCATCACGATGCGCCGCGACGCGATCTACCACTC
GACCTACACGGGCAAGCCGCCCGACGAGCCCGCGGTGCTCGGCGTCGCGCTCAACGAGGTGTTCGTGCCGCTGCTGCAAA
AGCAGTTCACGGAAATCACCGACTTCTACCTGCCGCCCGAAGGCTGCAGCTACCGGATGGCCATCGTCCAGATGAAGAAG
AGCTACGCGGGCCACGCGAAGCGCGTGATGTTCGGCGTGTGGAGCTTCCTGCGGCAGTTCATGTATACGAAGTTCATCGT
GGTCGTCGACGAGGACGTGAACATCCGCGACTGGAAGGAAGTGATCTGGGCGATCACGACGCGCGTCGACCCCGTGCGCG
ACACGGTGATGGTCGACAGCACGCCGATCGACTATCTCGACTTCGCGTCGCCGGTGGCCGGACTCGGCTCGAAGATGGGG
CTCGACGCGACCAACAAGTGGCCGGGCGAAACCAGCCGCGAATGGGGCCGCCCGATCGAGATGGACGCGGCCGTGAAGGC
GCGCGTCGACCGGCTGTGGCAGGAGATCGGCCTCTGA

Upstream 100 bases:

>100_bases
CATGGCTGCCCGGGGTAAAATCGTCGGTCAATTCGGGGTCGCAGCCGGCCGCTGCCCCGCCCATCGCTGCCCGCTCATGC
GGGTTGCCCGGACCTTCTTC

Downstream 100 bases:

>100_bases
CGCCAGGCAGGCCGGTGCCTGCCGGCCTGCGCATCGCAATCGCCGCAAACACCCAGAAGATGAGCTTTCCGCCCGCCTCC
ATGCTGTCCGACGGATTCTT

Product: UbiD family decarboxylase

Products: 2-octaprenylphenol; CO2 [C]

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 518; Mature: 518

Protein sequence:

>518_residues
MKYKDLRDFIQRLEALGELRRVTQPVSPVLEMTELCDRVLRAGGPALLFNAPPGNAFPVLGNLFGTPRRVALGMGVDAGD
DAALGSLRDLGRLLSALKEPDPPKSLKDAGKLLSLAKAVWDMAPKSVSSPPCQEIVWEGADVDLNKLPIQTCWPGDAGPL
VTWGLTVTRGPNKSRQNLGIYRQQLIGRNKLIMRWLAHRGGALDFREFALQNPGKPYPVAVVLGADPATTLGAVTPVPDS
LSEYQFAGLLRGSRTELAKCLTPGVDTLQVPARAEIVLEGFIHPQEGAPAPAPAGAPPRPAGNAAAAYEHALEGPYGDHT
GYYNEQEWFPVFTVERITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFTEITDFYLPPEGCSYRMAIVQMKK
SYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNIRDWKEVIWAITTRVDPVRDTVMVDSTPIDYLDFASPVAGLGSKMG
LDATNKWPGETSREWGRPIEMDAAVKARVDRLWQEIGL

Sequences:

>Translated_518_residues
MKYKDLRDFIQRLEALGELRRVTQPVSPVLEMTELCDRVLRAGGPALLFNAPPGNAFPVLGNLFGTPRRVALGMGVDAGD
DAALGSLRDLGRLLSALKEPDPPKSLKDAGKLLSLAKAVWDMAPKSVSSPPCQEIVWEGADVDLNKLPIQTCWPGDAGPL
VTWGLTVTRGPNKSRQNLGIYRQQLIGRNKLIMRWLAHRGGALDFREFALQNPGKPYPVAVVLGADPATTLGAVTPVPDS
LSEYQFAGLLRGSRTELAKCLTPGVDTLQVPARAEIVLEGFIHPQEGAPAPAPAGAPPRPAGNAAAAYEHALEGPYGDHT
GYYNEQEWFPVFTVERITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFTEITDFYLPPEGCSYRMAIVQMKK
SYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNIRDWKEVIWAITTRVDPVRDTVMVDSTPIDYLDFASPVAGLGSKMG
LDATNKWPGETSREWGRPIEMDAAVKARVDRLWQEIGL
>Mature_518_residues
MKYKDLRDFIQRLEALGELRRVTQPVSPVLEMTELCDRVLRAGGPALLFNAPPGNAFPVLGNLFGTPRRVALGMGVDAGD
DAALGSLRDLGRLLSALKEPDPPKSLKDAGKLLSLAKAVWDMAPKSVSSPPCQEIVWEGADVDLNKLPIQTCWPGDAGPL
VTWGLTVTRGPNKSRQNLGIYRQQLIGRNKLIMRWLAHRGGALDFREFALQNPGKPYPVAVVLGADPATTLGAVTPVPDS
LSEYQFAGLLRGSRTELAKCLTPGVDTLQVPARAEIVLEGFIHPQEGAPAPAPAGAPPRPAGNAAAAYEHALEGPYGDHT
GYYNEQEWFPVFTVERITMRRDAIYHSTYTGKPPDEPAVLGVALNEVFVPLLQKQFTEITDFYLPPEGCSYRMAIVQMKK
SYAGHAKRVMFGVWSFLRQFMYTKFIVVVDEDVNIRDWKEVIWAITTRVDPVRDTVMVDSTPIDYLDFASPVAGLGSKMG
LDATNKWPGETSREWGRPIEMDAAVKARVDRLWQEIGL

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=518, Percent_Identity=65.8301158301158, Blast_Score=703, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=467, Percent_Identity=24.1970021413276, Blast_Score=108, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: NA

Molecular weight: Translated: 56957; Mature: 56957

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00024 HEMOPEXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYKDLRDFIQRLEALGELRRVTQPVSPVLEMTELCDRVLRAGGPALLFNAPPGNAFPVL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
GNLFGTPRRVALGMGVDAGDDAALGSLRDLGRLLSALKEPDPPKSLKDAGKLLSLAKAVW
HHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
DMAPKSVSSPPCQEIVWEGADVDLNKLPIQTCWPGDAGPLVTWGLTVTRGPNKSRQNLGI
HHCCCCCCCCCHHHHHCCCCCCCHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHH
YRQQLIGRNKLIMRWLAHRGGALDFREFALQNPGKPYPVAVVLGADPATTLGAVTPVPDS
HHHHHHCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCCCCCCC
LSEYQFAGLLRGSRTELAKCLTPGVDTLQVPARAEIVLEGFIHPQEGAPAPAPAGAPPRP
HHHHHHHHHHCCCHHHHHHHHCCCCCCEECCCHHEEEHEECCCCCCCCCCCCCCCCCCCC
AGNAAAAYEHALEGPYGDHTGYYNEQEWFPVFTVERITMRRDAIYHSTYTGKPPDEPAVL
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCEE
GVALNEVFVPLLQKQFTEITDFYLPPEGCSYRMAIVQMKKSYAGHAKRVMFGVWSFLRQF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MYTKFIVVVDEDVNIRDWKEVIWAITTRVDPVRDTVMVDSTPIDYLDFASPVAGLGSKMG
HHHEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCC
LDATNKWPGETSREWGRPIEMDAAVKARVDRLWQEIGL
CCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKYKDLRDFIQRLEALGELRRVTQPVSPVLEMTELCDRVLRAGGPALLFNAPPGNAFPVL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
GNLFGTPRRVALGMGVDAGDDAALGSLRDLGRLLSALKEPDPPKSLKDAGKLLSLAKAVW
HHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
DMAPKSVSSPPCQEIVWEGADVDLNKLPIQTCWPGDAGPLVTWGLTVTRGPNKSRQNLGI
HHCCCCCCCCCHHHHHCCCCCCCHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHH
YRQQLIGRNKLIMRWLAHRGGALDFREFALQNPGKPYPVAVVLGADPATTLGAVTPVPDS
HHHHHHCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEEECCCCCHHHCCCCCCCCC
LSEYQFAGLLRGSRTELAKCLTPGVDTLQVPARAEIVLEGFIHPQEGAPAPAPAGAPPRP
HHHHHHHHHHCCCHHHHHHHHCCCCCCEECCCHHEEEHEECCCCCCCCCCCCCCCCCCCC
AGNAAAAYEHALEGPYGDHTGYYNEQEWFPVFTVERITMRRDAIYHSTYTGKPPDEPAVL
CCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCCCCCCCEE
GVALNEVFVPLLQKQFTEITDFYLPPEGCSYRMAIVQMKKSYAGHAKRVMFGVWSFLRQF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
MYTKFIVVVDEDVNIRDWKEVIWAITTRVDPVRDTVMVDSTPIDYLDFASPVAGLGSKMG
HHHEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCC
LDATNKWPGETSREWGRPIEMDAAVKARVDRLWQEIGL
CCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 3-octaprenyl-4-hydroxybenzoate [C]

Specific reaction: 3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2 [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA