| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116688968
Identifier: 116688968
GI number: 116688968
Start: 1051982
End: 1053193
Strand: Reverse
Name: 116688968
Synonym: Bcen2424_0945
Alternate gene names: NA
Gene position: 1053193-1051982 (Counterclockwise)
Preceding gene: 116688971
Following gene: 116688964
Centisome position: 30.23
GC content: 68.07
Gene sequence:
>1212_bases ATGAACAATATGCACCTGTCATCCATGTTGATCCCGGCGCTGTGCGCGTCGCTACTCGCATCGAGCGTCGCGCTCGCCGA CGGCAGCGGCCCGCCACCCTACGTCGAAGGCAACCGCGCACCGAAAGGATTCGCGCGCCCGCCGTTCCACACGAAGCCGC GTGCGAGCACGGCCACGATCGCCGGCCTCACGCCGGCACTCGCGCGGCATGCATACGGGTTCGACGCGATCGCGAACCAG GGCGACGGAATGGTCGTCGCGATCGTCGACGCGTACGACGACCCGAAGATCGAATCCGATCTCGGCGTGTTCAGCACCGC GTTCTCGCTGCCGGCCTGCACGTCGTCGAACGGCTGTTTCACCAAGGTGTACGCGCACGGGGCACGGCCCAAGCCCGATT CGGGCTGGGCGCTCGAGATCTCGCTCGATGTCGAATGGGTGCATGCGATCGCACCGAAGGCGAAGATCGTGCTCGTCGAG GCCGCATCGGCCAGCTTCAGCGACCTGCTGGCCGCGGTCGACGTCGCGGTCAAGCGCGGCGCGTCGGTCGTGTCGATGAG TTTCGGCGGCAACGAATTCAGCAGCGAGACCGGCTTCGACGGCCACTTCAACGTACCGGGCGTCACGTTCGTCGCATCGT CAGGCGACAGCGGCACCGGCACCGAATACCCGGCCGCGTCGCGTTACGTGGTATCCGTCGGCGGCACGACGCTGTCGTCG GACACGGCCGGCAACTACATCGGCGAGGCGGCATGGAGCGGCAGCGGCGGCGGCGTGAGCAACGTCGAGGCCGAGCCGGC CGGCCAGACCGCGTGGCCGATTCCGGTGGCCGGCAAGCGCGGCGTACCCGACGTCAGCTACGACGCGAATCCGTCCAGCG GTTTCGCGGTGTACGACTCGGTCACCTATCAGGGGCAGGCCGGCTGGTTCCAGGTCGGCGGCACGAGCGCGGGGGCGCCG CAATGGTCGGCGCTCGTCGCGATCGCGAATTCGCTGCGCACGGCGGCCGGCAAGAAATCGTTGAGCGGCACCTACGACAC GCTCTATACGGTCGGTAAAACCGCGTACGGCAGCGACTTCCACGACGTGACGACCGGGTCCAACGGCAATTGCGGCAGCA TCTGCAATGCGGCGGGCGGCTACGACTACGTGACGGGCCTCGGTTCGCCGATCGCGCCGGCGCTCGTGCAGGCGCTCGTC ACGCGGCCGTAA
Upstream 100 bases:
>100_bases ATCAGACATTCCCGTATCCGGCCGATATTCGATGTAATTACCTTCGGCGATTTCGTAAAATTGTTTCGCTACTCCACCCG ATCGACATGGAGACTCAAAA
Downstream 100 bases:
>100_bases TCGCGCGGCCTCGGCCGGTGGACTCGCGGCACGTGGTTCAGCCGCCGCGCCACGCGCGGTCGAGCGCGTTCAGCGTCGTC AACGCCCCGCCTTTCAGCCC
Product: peptidase S8/S53 subtilisin kexin sedolisin
Products: NA
Alternate protein names: Serine Protease; Peptidase S8 And; Peptidase S8/S53 Subtilisin Kexin Sedolisin; Kumamolisin; Ig Family Protein; Protease-Like Protein; Protease; Pseudomonapepsin; Serine Protease Kumamolysin; Protease Related Protein; Peptidase S8 And S; Subtilase Family Serine Protease; Physarolisin II; Serine-Carboxyl Peptidase; Neutral Zinc Metalloprotease; Lipoprotein; Protease Protein; Serine Protease Subtilase Family; Peptidase S8 Or; Kelch Repeat-Containing Protein; Xanthomonapepsin Related Protein; Peptidase Related Protein; Pro-Kumamolisin Activation Domain-Containing Protein; Conserved Hypothethical Protein Peptidase S8 And; Curculin Domain-Containing Protein; Kumamolisin/Serine Peptidase; Subtilisin-Like Serine Protease; Membrane Associated Serine Protease; Protease-Like; Chain A Kumamolisin-As Apo; Pro-Kumamolisin Activation Domain Protein; Subtilase Family Protein
Number of amino acids: Translated: 403; Mature: 403
Protein sequence:
>403_residues MNNMHLSSMLIPALCASLLASSVALADGSGPPPYVEGNRAPKGFARPPFHTKPRASTATIAGLTPALARHAYGFDAIANQ GDGMVVAIVDAYDDPKIESDLGVFSTAFSLPACTSSNGCFTKVYAHGARPKPDSGWALEISLDVEWVHAIAPKAKIVLVE AASASFSDLLAAVDVAVKRGASVVSMSFGGNEFSSETGFDGHFNVPGVTFVASSGDSGTGTEYPAASRYVVSVGGTTLSS DTAGNYIGEAAWSGSGGGVSNVEAEPAGQTAWPIPVAGKRGVPDVSYDANPSSGFAVYDSVTYQGQAGWFQVGGTSAGAP QWSALVAIANSLRTAAGKKSLSGTYDTLYTVGKTAYGSDFHDVTTGSNGNCGSICNAAGGYDYVTGLGSPIAPALVQALV TRP
Sequences:
>Translated_403_residues MNNMHLSSMLIPALCASLLASSVALADGSGPPPYVEGNRAPKGFARPPFHTKPRASTATIAGLTPALARHAYGFDAIANQ GDGMVVAIVDAYDDPKIESDLGVFSTAFSLPACTSSNGCFTKVYAHGARPKPDSGWALEISLDVEWVHAIAPKAKIVLVE AASASFSDLLAAVDVAVKRGASVVSMSFGGNEFSSETGFDGHFNVPGVTFVASSGDSGTGTEYPAASRYVVSVGGTTLSS DTAGNYIGEAAWSGSGGGVSNVEAEPAGQTAWPIPVAGKRGVPDVSYDANPSSGFAVYDSVTYQGQAGWFQVGGTSAGAP QWSALVAIANSLRTAAGKKSLSGTYDTLYTVGKTAYGSDFHDVTTGSNGNCGSICNAAGGYDYVTGLGSPIAPALVQALV TRP >Mature_403_residues MNNMHLSSMLIPALCASLLASSVALADGSGPPPYVEGNRAPKGFARPPFHTKPRASTATIAGLTPALARHAYGFDAIANQ GDGMVVAIVDAYDDPKIESDLGVFSTAFSLPACTSSNGCFTKVYAHGARPKPDSGWALEISLDVEWVHAIAPKAKIVLVE AASASFSDLLAAVDVAVKRGASVVSMSFGGNEFSSETGFDGHFNVPGVTFVASSGDSGTGTEYPAASRYVVSVGGTTLSS DTAGNYIGEAAWSGSGGGVSNVEAEPAGQTAWPIPVAGKRGVPDVSYDANPSSGFAVYDSVTYQGQAGWFQVGGTSAGAP QWSALVAIANSLRTAAGKKSLSGTYDTLYTVGKTAYGSDFHDVTTGSNGNCGSICNAAGGYDYVTGLGSPIAPALVQALV TRP
Specific function: Unknown
COG id: COG4934
COG function: function code O; Predicted protease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40890; Mature: 40890
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNMHLSSMLIPALCASLLASSVALADGSGPPPYVEGNRAPKGFARPPFHTKPRASTATI CCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE AGLTPALARHAYGFDAIANQGDGMVVAIVDAYDDPKIESDLGVFSTAFSLPACTSSNGCF CCCCHHHHHHHCCCHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCE TKVYAHGARPKPDSGWALEISLDVEWVHAIAPKAKIVLVEAASASFSDLLAAVDVAVKRG EEEEECCCCCCCCCCEEEEEEEEEEEHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCC ASVVSMSFGGNEFSSETGFDGHFNVPGVTFVASSGDSGTGTEYPAASRYVVSVGGTTLSS CEEEEEECCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCEECC DTAGNYIGEAAWSGSGGGVSNVEAEPAGQTAWPIPVAGKRGVPDVSYDANPSSGFAVYDS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE VTYQGQAGWFQVGGTSAGAPQWSALVAIANSLRTAAGKKSLSGTYDTLYTVGKTAYGSDF EEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCC HDVTTGSNGNCGSICNAAGGYDYVTGLGSPIAPALVQALVTRP CCCCCCCCCCCCHHHCCCCCCHHHHCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MNNMHLSSMLIPALCASLLASSVALADGSGPPPYVEGNRAPKGFARPPFHTKPRASTATI CCCCCHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE AGLTPALARHAYGFDAIANQGDGMVVAIVDAYDDPKIESDLGVFSTAFSLPACTSSNGCF CCCCHHHHHHHCCCHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCE TKVYAHGARPKPDSGWALEISLDVEWVHAIAPKAKIVLVEAASASFSDLLAAVDVAVKRG EEEEECCCCCCCCCCEEEEEEEEEEEHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHCC ASVVSMSFGGNEFSSETGFDGHFNVPGVTFVASSGDSGTGTEYPAASRYVVSVGGTTLSS CEEEEEECCCCCCCCCCCCCCEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCEECC DTAGNYIGEAAWSGSGGGVSNVEAEPAGQTAWPIPVAGKRGVPDVSYDANPSSGFAVYDS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE VTYQGQAGWFQVGGTSAGAPQWSALVAIANSLRTAAGKKSLSGTYDTLYTVGKTAYGSDF EEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCC HDVTTGSNGNCGSICNAAGGYDYVTGLGSPIAPALVQALVTRP CCCCCCCCCCCCHHHCCCCCCHHHHCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA