| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688954
Identifier: 116688954
GI number: 116688954
Start: 1038937
End: 1039659
Strand: Reverse
Name: 116688954
Synonym: Bcen2424_0931
Alternate gene names: NA
Gene position: 1039659-1038937 (Counterclockwise)
Preceding gene: 116688957
Following gene: 116688953
Centisome position: 29.84
GC content: 56.71
Gene sequence:
>723_bases ATGGCTAGCAGCAAAGAGAAGCTCGCAACACCGCCCGTCATCTCCTACGGTTCATTCATCGCGTTCTTGAACAAGCTTCG GGATGCAGGCACGGTGCCGGCACGCATCGACAAAACGGTGATGCCCAAAGCCTCGGGATCGCAACAATCGGGAATCATCG CTGCGCTCCGCTTTCTGGGCTTCATCGATGACACCGGCAAACCCAAGGATCACTTCAAGCCGTTTGTCCTCTCTGCTGAC GATGCCCGGAAATCTACGCTCGGCCCCATCCTGCGCGAGTCATACGCCTTCCTCTTCAGCGACTCTGAATTTGACCTGAG CCACGCAAGTACCGGCCAAATGACCGAGAAGTTTCGCGAACTGGGGATTAGCGGCAGTACGCTGACGAAGACCATCGCGT TCTTCATCCCCGCCGCGAAAGAATGTGGAATCGAGGTATCGCCGCACGTCAAAGCGCCGGCAGCCCCCAAAAGCAACGGT AGCAGGAAATCGCCCAAAACCACGGAAGACGAACAACGACCGAGTGAGACGGGGGGAAGAGTGCCCCAGGAGGAGGACGA TCAAGACGTCGAACGATTTGAAATCCCTCTTCCGGGGAAGCAGCAAGGCGCAAAGATCATTGTTCCGAAAGGCCTCGATG CAGACGACTGGGTGATGCTGCAAACGATGCTCGCAGCATATATCAAGCGGTGGAAGGGCTTCACGCCCGAAGGGAAGGAA TGA
Upstream 100 bases:
>100_bases TTCAGGACAGATCTCGGCGCGCCGCGATGAAATTGGTTTGCAAACGCCGAAAACCGATGGTAGATTTAGCGCCATCGATC ACTCCGCTCTGGTAGATCAC
Downstream 100 bases:
>100_bases AAAGAAGATGATGCGGCCCCGGTTACATAGCTCGCAGTAGCCGGGCCGGAAAAACAACGCCCCCAACACCTTGATCTCGG CCAGGAGATCGAAACGTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 240; Mature: 239
Protein sequence:
>240_residues MASSKEKLATPPVISYGSFIAFLNKLRDAGTVPARIDKTVMPKASGSQQSGIIAALRFLGFIDDTGKPKDHFKPFVLSAD DARKSTLGPILRESYAFLFSDSEFDLSHASTGQMTEKFRELGISGSTLTKTIAFFIPAAKECGIEVSPHVKAPAAPKSNG SRKSPKTTEDEQRPSETGGRVPQEEDDQDVERFEIPLPGKQQGAKIIVPKGLDADDWVMLQTMLAAYIKRWKGFTPEGKE
Sequences:
>Translated_240_residues MASSKEKLATPPVISYGSFIAFLNKLRDAGTVPARIDKTVMPKASGSQQSGIIAALRFLGFIDDTGKPKDHFKPFVLSAD DARKSTLGPILRESYAFLFSDSEFDLSHASTGQMTEKFRELGISGSTLTKTIAFFIPAAKECGIEVSPHVKAPAAPKSNG SRKSPKTTEDEQRPSETGGRVPQEEDDQDVERFEIPLPGKQQGAKIIVPKGLDADDWVMLQTMLAAYIKRWKGFTPEGKE >Mature_239_residues ASSKEKLATPPVISYGSFIAFLNKLRDAGTVPARIDKTVMPKASGSQQSGIIAALRFLGFIDDTGKPKDHFKPFVLSADD ARKSTLGPILRESYAFLFSDSEFDLSHASTGQMTEKFRELGISGSTLTKTIAFFIPAAKECGIEVSPHVKAPAAPKSNGS RKSPKTTEDEQRPSETGGRVPQEEDDQDVERFEIPLPGKQQGAKIIVPKGLDADDWVMLQTMLAAYIKRWKGFTPEGKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26178; Mature: 26047
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSKEKLATPPVISYGSFIAFLNKLRDAGTVPARIDKTVMPKASGSQQSGIIAALRFLG CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHCCCCCCCCHHHHHHHHHHHH FIDDTGKPKDHFKPFVLSADDARKSTLGPILRESYAFLFSDSEFDLSHASTGQMTEKFRE HHCCCCCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHH LGISGSTLTKTIAFFIPAAKECGIEVSPHVKAPAAPKSNGSRKSPKTTEDEQRPSETGGR HCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCC VPQEEDDQDVERFEIPLPGKQQGAKIIVPKGLDADDWVMLQTMLAAYIKRWKGFTPEGKE CCCCCCCCCHHHEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure ASSKEKLATPPVISYGSFIAFLNKLRDAGTVPARIDKTVMPKASGSQQSGIIAALRFLG CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHCCHHCCCCCCCCHHHHHHHHHHHH FIDDTGKPKDHFKPFVLSADDARKSTLGPILRESYAFLFSDSEFDLSHASTGQMTEKFRE HHCCCCCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHH LGISGSTLTKTIAFFIPAAKECGIEVSPHVKAPAAPKSNGSRKSPKTTEDEQRPSETGGR HCCCCHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHCCC VPQEEDDQDVERFEIPLPGKQQGAKIIVPKGLDADDWVMLQTMLAAYIKRWKGFTPEGKE CCCCCCCCCHHHEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA