| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688948
Identifier: 116688948
GI number: 116688948
Start: 1032069
End: 1032926
Strand: Direct
Name: 116688948
Synonym: Bcen2424_0925
Alternate gene names: NA
Gene position: 1032069-1032926 (Clockwise)
Preceding gene: 116688947
Following gene: 116688952
Centisome position: 29.62
GC content: 52.21
Gene sequence:
>858_bases ATGTCTGATGACCCTAGGCTCCTAATGGAGCTTGACCGGACCACTGAGACCGAAGTCGCCAACCGCGCAAAGCGAAGAAT ACGGCGTGCGCCACCACCTGACGTTGATGACGTGTCGAAATCAATTCACTTCCTACGCGGAGTTGGTTCCCGAGCATCGT TTGTATTGACCAGCTTCTATTTTCTTCTGGCTACCGAAATCGATGGCAAGAGGCCGTGTACCGTTCCCGGCTACCCAGGG GAAGTCCTTCAGAGTTATCTACAATTCGTGTCGCTCAATAATCTCGCCCTTACATGCCGCAAGGTATTCGATCACGGGGC GAAAGGTCTCACCGGCGCACAGTTCGGAAAGCAACGGGACGAAACCCTCAAGGGGCATGCTGAATATTGGGCGAAGAGCT CGCAACGCCCCATCGAGGATGCATGTTCGGCGCTTCATTTCCTGCGCACCTTTTTCGCCAAGTGCTCGAAAACCGATGCC GCTCTGTTCAGAGAAGGAACAACGCTCGGTCGAAGGATCGGGTTTATCAAACAATATGCCGATCACGCTGCCGCCCATCT TTCATTGGATGACTATGAGTTCAACCATCTTGATTTGGCGCACGTTGTTGCAGCACTAGTACTTGTAGGTGAGATCATTC GTAGCTTCGATGCGCCTTACCAACCAACTGACTACTATGATCAAATCGATCAAGCGTCGTTGGATGCTTCGGTTGCCTTG TTCCCCGACACCCCTCAGCTCAGGCTCTTCCAAAATATGAAGGTCGGGTCGCAAGCTAGTATGTGCTGGCAAGTGGGGGA GGCATCCGGGATTCAAATGATGACAGAGCAACTTCCTTACACGATTGGTTGGTTCTGA
Upstream 100 bases:
>100_bases TGTGAGTCGGGATTTTCGGCGGATTTAATATCGGACCGGACACGTCATCGGTTATATTCAGGAGTTGCATCGTGCTTGAC GCGATCCACCGGAGATTGGT
Downstream 100 bases:
>100_bases GTCGGCCCCGTAGGGCCCGCCCGACATTCAAGCAGATTCGAGCAGCGAATCGATGATCTTGACCGCTTTCCGGCTCGCAT CGTTCGGGCTCAGATGCGCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSDDPRLLMELDRTTETEVANRAKRRIRRAPPPDVDDVSKSIHFLRGVGSRASFVLTSFYFLLATEIDGKRPCTVPGYPG EVLQSYLQFVSLNNLALTCRKVFDHGAKGLTGAQFGKQRDETLKGHAEYWAKSSQRPIEDACSALHFLRTFFAKCSKTDA ALFREGTTLGRRIGFIKQYADHAAAHLSLDDYEFNHLDLAHVVAALVLVGEIIRSFDAPYQPTDYYDQIDQASLDASVAL FPDTPQLRLFQNMKVGSQASMCWQVGEASGIQMMTEQLPYTIGWF
Sequences:
>Translated_285_residues MSDDPRLLMELDRTTETEVANRAKRRIRRAPPPDVDDVSKSIHFLRGVGSRASFVLTSFYFLLATEIDGKRPCTVPGYPG EVLQSYLQFVSLNNLALTCRKVFDHGAKGLTGAQFGKQRDETLKGHAEYWAKSSQRPIEDACSALHFLRTFFAKCSKTDA ALFREGTTLGRRIGFIKQYADHAAAHLSLDDYEFNHLDLAHVVAALVLVGEIIRSFDAPYQPTDYYDQIDQASLDASVAL FPDTPQLRLFQNMKVGSQASMCWQVGEASGIQMMTEQLPYTIGWF >Mature_284_residues SDDPRLLMELDRTTETEVANRAKRRIRRAPPPDVDDVSKSIHFLRGVGSRASFVLTSFYFLLATEIDGKRPCTVPGYPGE VLQSYLQFVSLNNLALTCRKVFDHGAKGLTGAQFGKQRDETLKGHAEYWAKSSQRPIEDACSALHFLRTFFAKCSKTDAA LFREGTTLGRRIGFIKQYADHAAAHLSLDDYEFNHLDLAHVVAALVLVGEIIRSFDAPYQPTDYYDQIDQASLDASVALF PDTPQLRLFQNMKVGSQASMCWQVGEASGIQMMTEQLPYTIGWF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31970; Mature: 31838
Theoretical pI: Translated: 6.71; Mature: 6.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDDPRLLMELDRTTETEVANRAKRRIRRAPPPDVDDVSKSIHFLRGVGSRASFVLTSFY CCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH FLLATEIDGKRPCTVPGYPGEVLQSYLQFVSLNNLALTCRKVFDHGAKGLTGAQFGKQRD HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHCCHHH ETLKGHAEYWAKSSQRPIEDACSALHFLRTFFAKCSKTDAALFREGTTLGRRIGFIKQYA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHH DHAAAHLSLDDYEFNHLDLAHVVAALVLVGEIIRSFDAPYQPTDYYDQIDQASLDASVAL HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEE FPDTPQLRLFQNMKVGSQASMCWQVGEASGIQMMTEQLPYTIGWF CCCCCHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCC >Mature Secondary Structure SDDPRLLMELDRTTETEVANRAKRRIRRAPPPDVDDVSKSIHFLRGVGSRASFVLTSFY CCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHH FLLATEIDGKRPCTVPGYPGEVLQSYLQFVSLNNLALTCRKVFDHGAKGLTGAQFGKQRD HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCHHHHCCHHH ETLKGHAEYWAKSSQRPIEDACSALHFLRTFFAKCSKTDAALFREGTTLGRRIGFIKQYA HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHH DHAAAHLSLDDYEFNHLDLAHVVAALVLVGEIIRSFDAPYQPTDYYDQIDQASLDASVAL HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEE FPDTPQLRLFQNMKVGSQASMCWQVGEASGIQMMTEQLPYTIGWF CCCCCHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA