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The map label for this gene is rpoE [H]

Identifier: 116688877

GI number: 116688877

Start: 960517

End: 961032

Strand: Direct

Name: rpoE [H]

Synonym: Bcen2424_0854

Alternate gene names: 116688877

Gene position: 960517-961032 (Clockwise)

Preceding gene: 116688876

Following gene: 116688878

Centisome position: 27.57

GC content: 71.32

Gene sequence:

>516_bases
ATGAGCTATGAGTCGGACCTGCTGGTGTGGCTTCCGCATCTCACGCGCTATGCGCGTGCGCTGACGGGCGAGCGCGCGTG
GGCCGACGATCTCGTGCAGGACACGCTCGAGCGTGCGCTGAACCGGCCGCCGCGCGACGGCGGCAACCTGCGCGCGTGGC
TGCTGACGCTGTTGCGGCACCGCTTCATCGATCAGTTGCGCGCGCGGCACGAGATCGCGGTCGACGACGCGACGGCGCCG
TGGCAGACGATGGCTGCCCCCGCCGGCGAGGTCGGCGGCCTGGAGTTGCGCGACGTGCAGCGCGCGCTGTACCGGCTGCC
GGTCGAGCAGCGCGAGGTGCTGTTGCTGGTCGCGCTCGAGGAGTTGAGCTATCGCGATGCCGCGCAAGTGCTCGGCGTGC
CGGTCGGCACGGTGATGTCTCGGCTCGCGCGGGCGCGTGCGCAGATGCGCGCGTTGCTGTCGGACGCGCCGTCGTCGCAC
GGCACGGCCACGTTACGGGTGATCGGGAAGCCATGA

Upstream 100 bases:

>100_bases
GAAGATGGACCACAAGGCCGGCGACGCGGGCGGCGACGGAATCGGCGGCATGTGGCACGTCGCACGGCCGTGACCGCGCG
GCGACGCGCGAGGCATCCCG

Downstream 100 bases:

>100_bases
TGGACGATCCGCGCAAGCCTTCGAACCAGCAGGACGACGATGCGTCGGCGCAACTGCTGTCCGCGCTGCTGGACGGCGAA
CTGTCCGGGCACGAGCGGCG

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MSYESDLLVWLPHLTRYARALTGERAWADDLVQDTLERALNRPPRDGGNLRAWLLTLLRHRFIDQLRARHEIAVDDATAP
WQTMAAPAGEVGGLELRDVQRALYRLPVEQREVLLLVALEELSYRDAAQVLGVPVGTVMSRLARARAQMRALLSDAPSSH
GTATLRVIGKP

Sequences:

>Translated_171_residues
MSYESDLLVWLPHLTRYARALTGERAWADDLVQDTLERALNRPPRDGGNLRAWLLTLLRHRFIDQLRARHEIAVDDATAP
WQTMAAPAGEVGGLELRDVQRALYRLPVEQREVLLLVALEELSYRDAAQVLGVPVGTVMSRLARARAQMRALLSDAPSSH
GTATLRVIGKP
>Mature_170_residues
SYESDLLVWLPHLTRYARALTGERAWADDLVQDTLERALNRPPRDGGNLRAWLLTLLRHRFIDQLRARHEIAVDDATAPW
QTMAAPAGEVGGLELRDVQRALYRLPVEQREVLLLVALEELSYRDAAQVLGVPVGTVMSRLARARAQMRALLSDAPSSHG
TATLRVIGKP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19122; Mature: 18991

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYESDLLVWLPHLTRYARALTGERAWADDLVQDTLERALNRPPRDGGNLRAWLLTLLRH
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
RFIDQLRARHEIAVDDATAPWQTMAAPAGEVGGLELRDVQRALYRLPVEQREVLLLVALE
HHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
ELSYRDAAQVLGVPVGTVMSRLARARAQMRALLSDAPSSHGTATLRVIGKP
HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
>Mature Secondary Structure 
SYESDLLVWLPHLTRYARALTGERAWADDLVQDTLERALNRPPRDGGNLRAWLLTLLRH
CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
RFIDQLRARHEIAVDDATAPWQTMAAPAGEVGGLELRDVQRALYRLPVEQREVLLLVALE
HHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
ELSYRDAAQVLGVPVGTVMSRLARARAQMRALLSDAPSSHGTATLRVIGKP
HHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]