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The map label for this gene is pocR [H]

Identifier: 116688852

GI number: 116688852

Start: 929975

End: 930910

Strand: Reverse

Name: pocR [H]

Synonym: Bcen2424_0829

Alternate gene names: 116688852

Gene position: 930910-929975 (Counterclockwise)

Preceding gene: 162227935

Following gene: 116688850

Centisome position: 26.72

GC content: 70.41

Gene sequence:

>936_bases
ATGAGTCTCTCCCTCTGCGCCCCGCCCGTCGACCGCGCCGCCGCCCTGGCCGGCGGCGATCTGCCGTTCGGCCTGCAGTC
GGTCTGTCGCACGCTCGCCGACGCGAACGCGACGCTCGAGCGCTTCGCATGGCTCGGCGATCACCTCGCGATCGCCGAAT
GGACGCGGGTCACCGATGAAAGCGAGACGGTCTACGAGCAGCCCGGCCATCACACGCTGTCGTGCTACCTCGACGGCGGC
TATCGGACCGAGCGCCAGCGCGTGCCGCGCTACGGCGCGCCGAGCCTGCTGTGCGCGTTGCCGGGCGACCATGAATCACG
CTGGTGGGTGCGCGGCGAAATGCATTTCATCCACCTCTATTTCCTGCCCGAGCACTTCACGCAGCGTGCGATCCGCGAGC
TCGATCGCGAGCCGCGCGAGCTGAAGCTCGCCGATCGCACCTATTTCGAGGATGCACGCGTCGCGGCGCTGCTGCGCTCG
CTCGCGCTGGATGGCTGGGACGATGCCGACGAGCGGCTGCGCGTGAACGAGACCGCGCACGAAGTGCTGAGCCTGCTGCT
GCGCGGCCAGAGCACGACGCGCACCGACACATCGTTCCGCGGCGGGCTGGCGCCGGCCGTGCGCCGCCGCGTGCGCGACT
ACATCGACACGTATCTCACGCAGCCGCTGACGCTCGGCGAACTTGCCGAGGTCGCCGCGCTGTCCGAATACCATTTCTCG
CGGATGTTCCGGCTGTCGTTCGGCCGCGCGCCGCACGCGTGGGTGGCCGAGCAACGGCTCGCCCGGGCCCGCGAGCTGCT
GCGCACGACGGCGCTGCCGCTCGCGCAGATCGCGGCCGACTGCGGCTACGCGAACGCCGGCCACTTCAGCCATCGCTTTC
GCGACGCGCACGGCACGACGCCGAATACGTATCGGCGCGCGATGCAAGGCCGCTGA

Upstream 100 bases:

>100_bases
CCGACTATGCCGTCGCCCAGCGTGGGTCGATTGTCCGGAATTGCGGTCTTTTTCGGCGCGCCGCACGCGGCGGCGCGCGC
CCGCTTATACTCGGCGCATC

Downstream 100 bases:

>100_bases
GCGCGGCCCCTTTCCGCTGTTCCGCGCTTACGCGCCGCGCCGCGACAGTTCCTGTTCGAGCGCCGCGACGCCGGCCGGCA
GGTCGACCGGCACCTTCAGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSLSLCAPPVDRAAALAGGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRVTDESETVYEQPGHHTLSCYLDGG
YRTERQRVPRYGAPSLLCALPGDHESRWWVRGEMHFIHLYFLPEHFTQRAIRELDREPRELKLADRTYFEDARVAALLRS
LALDGWDDADERLRVNETAHEVLSLLLRGQSTTRTDTSFRGGLAPAVRRRVRDYIDTYLTQPLTLGELAEVAALSEYHFS
RMFRLSFGRAPHAWVAEQRLARARELLRTTALPLAQIAADCGYANAGHFSHRFRDAHGTTPNTYRRAMQGR

Sequences:

>Translated_311_residues
MSLSLCAPPVDRAAALAGGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRVTDESETVYEQPGHHTLSCYLDGG
YRTERQRVPRYGAPSLLCALPGDHESRWWVRGEMHFIHLYFLPEHFTQRAIRELDREPRELKLADRTYFEDARVAALLRS
LALDGWDDADERLRVNETAHEVLSLLLRGQSTTRTDTSFRGGLAPAVRRRVRDYIDTYLTQPLTLGELAEVAALSEYHFS
RMFRLSFGRAPHAWVAEQRLARARELLRTTALPLAQIAADCGYANAGHFSHRFRDAHGTTPNTYRRAMQGR
>Mature_310_residues
SLSLCAPPVDRAAALAGGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRVTDESETVYEQPGHHTLSCYLDGGY
RTERQRVPRYGAPSLLCALPGDHESRWWVRGEMHFIHLYFLPEHFTQRAIRELDREPRELKLADRTYFEDARVAALLRSL
ALDGWDDADERLRVNETAHEVLSLLLRGQSTTRTDTSFRGGLAPAVRRRVRDYIDTYLTQPLTLGELAEVAALSEYHFSR
MFRLSFGRAPHAWVAEQRLARARELLRTTALPLAQIAADCGYANAGHFSHRFRDAHGTTPNTYRRAMQGR

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35275; Mature: 35144

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSLCAPPVDRAAALAGGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRVTDE
CCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHCCCC
SETVYEQPGHHTLSCYLDGGYRTERQRVPRYGAPSLLCALPGDHESRWWVRGEMHFIHLY
CHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCCCCEEEECCCCCCCCEEEECCEEEEEEE
FLPEHFTQRAIRELDREPRELKLADRTYFEDARVAALLRSLALDGWDDADERLRVNETAH
ECCHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHHH
EVLSLLLRGQSTTRTDTSFRGGLAPAVRRRVRDYIDTYLTQPLTLGELAEVAALSEYHFS
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RMFRLSFGRAPHAWVAEQRLARARELLRTTALPLAQIAADCGYANAGHFSHRFRDAHGTT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCC
PNTYRRAMQGR
HHHHHHHHCCC
>Mature Secondary Structure 
SLSLCAPPVDRAAALAGGDLPFGLQSVCRTLADANATLERFAWLGDHLAIAEWTRVTDE
CCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHCCCC
SETVYEQPGHHTLSCYLDGGYRTERQRVPRYGAPSLLCALPGDHESRWWVRGEMHFIHLY
CHHHHHCCCCCEEEEEECCCCCCHHHHCCCCCCCCEEEECCCCCCCCEEEECCEEEEEEE
FLPEHFTQRAIRELDREPRELKLADRTYFEDARVAALLRSLALDGWDDADERLRVNETAH
ECCHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHHH
EVLSLLLRGQSTTRTDTSFRGGLAPAVRRRVRDYIDTYLTQPLTLGELAEVAALSEYHFS
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RMFRLSFGRAPHAWVAEQRLARARELLRTTALPLAQIAADCGYANAGHFSHRFRDAHGTT
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHHHHHCCCCC
PNTYRRAMQGR
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]