| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688551
Identifier: 116688551
GI number: 116688551
Start: 587166
End: 588965
Strand: Direct
Name: 116688551
Synonym: Bcen2424_0527
Alternate gene names: NA
Gene position: 587166-588965 (Clockwise)
Preceding gene: 116688550
Following gene: 116688552
Centisome position: 16.85
GC content: 68.0
Gene sequence:
>1800_bases ATGACCCAGCCGATCCGCTATTCGATTGTCCCGAAAGATCTTGCCGCGCACCTGTTCGAAGTGACGGTGACGGTTGCCGA TCCCGATCCCGAAGGCCAGCGTTTCTCGCTGCCGGTATGGATTCCGGGCAGCTATCTCGTGCGCGAGTTCGCGCGCAACA TCGTGACGCTGCGCGCGTTCAACGACGCGGGCCGCAAGGTGCGCATCGCGAAGACCGACAAGCACACGTGGCAGGCCGCG CCCGTGACCGGCGCGCTGACGCTGCGCTACGACGTGTATGCATGGGATTTGTCGGTGCGCTCCGCGTATCTCGACGAATC GGGCGGCTTCTTCAACGCGACGGCCGTGTTCCTGAGCGTCGCCGGTCGTGAGGACGCGCCGTGCGAAGTCGACATCGCGA AACCGGCCGGCGCGGCGTTCCGCACGTGGCGCGTCGGCACCGCGCTGCCCGAAGCGGGCGGCACCCGGCGTTACGGTTTC GGCGCGTATCGCGCGGCGAACTATGACGAGCTGTCCGACCATCCGGTGACGATCGGCGAATTCGCGCTCGCGACGTTCGA CGCGCACGGCGTGCCGCACGACATCGTGATCGCCGGGCGCGTGACGCAACTCGACCTGGAGCGGCTGCGTACCGATCTGA AACGCGTGTGCGAAGCGCAGATCGCGCTGTTCGAGCCGAAGTCGAAAAAGGCGCCGATGGACCGCTACGTATTCATGACG CTCGCGGTCAGCGACGGCTACGGCGGCCTCGAGCATCGCGCATCGACCGCGCTGATCTGCAACCGGACCGACCTGCCGGT GAAGGGGCGGCCGGAAACGACGGAAGGCTATCGCACGTATCTCGGCCTCTGCAGCCACGAGTATTTCCACACGTGGAACG TGAAGCGCATCAAGCCGGCGGCGTTCGTGCCGTACGACCTCACGCGCGAGAACTACACGTCGCTGCTGTGGCTGTTCGAG GGCTTCACGTCGTATTACGACGACCTGATGCTGGTGCGCAGCGGGCTGATGTCGCAGGACGACTATTTCGCGGCCCTCGG CCGCACGATCGGTGGCGTGCTGCGCGGCACGGGCCGGCTCAAGCAGAGCGTCGCGGAAAGCTCGTTCGACGCGTGGATCA AGTACTACCGCCAGGACGAGAACGCGACCAACGCGATCGTCAGCTATTACACGAAGGGCTCGCTCGTCGCGCTGGCGTTC GATCTCGCGATCCGCGCGCAGACGCGCAACCGGAAGTCGCTCGACGACGTGATGCGTCTGCTGTGGCAACGCTACGGCCG CGACTTCTATCGCGGCAAGCAGGCGGGCGTGGACGAAAACGAAGTCGAGGCGCTGATCGAGGAGGCGACGGGCGTCGCGC TCGGCCGCCTGTTCGCCGACGCCGTGCACGGCACGCGCGACCTGCCGCTCGGCGAACTGCTCGCGCCGTTCGGCGTGACG CTGGCCCCCGACGTCGCGACCGGCGCGGCCGCGAAACCGACGATCGGCGCGCGCCTGCGCGGCGGCGCGGACTGCACGTT GGCGGCGGTCTACGAAGGCGGCGCCGCGCATCGCGCGGGGCTGTCGGCCGGCGACACGCTGATCGCGGTCGACGGGCTGC GTGTGACGGGCACGAACCTCGATGCGCTGCTCGCACGCTACCGGCCGGGCGACAAGGTCGAGATTCACGCGTTCCGCCGC GACGAGCTGCGCACCGCGAAACTGAAGCTCGACGGCCCGGAAGTCACCCGCTACCGGCTGACGGCGGCCGCGAAGCCGGC TGCGGCCACGAAGGCCCGCGAAGCCTGGCTGAAGGGGTAA
Upstream 100 bases:
>100_bases TGCACGCCGGGCGCAGCGCCCGGCCAGCGAGGGGCGCCCGCATGATCTGCCGGCGCCTCTCTTCGTTTTCGCCGCCGTAT TCGACCGACCGATTGCCACG
Downstream 100 bases:
>100_bases TCGTACGAAAACGGGTAGCGGGGCACGATCGGCGATTGTTCTGTTGCTGCAACAATCCGTCGCCCTGAACCCGCTTTTTC GCGGTCATGCGGCCACGCAC
Product: peptidase M61 domain-containing protein
Products: NA
Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; M61 Glycyl Aminopeptidase; Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Pdz/Dhr/Glgf; Trypsin-Like Serine Protease; Metallopeptidase; Aminopeptidase N Family Protein; PDZ Domain-Containing Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; Signaling Protein; M61 Glycyl Aminopeptidase Protein; PDZ Domain Protein; M61 Glycyl Aminopeptidase Family Protein; Protease With C-Terminal PDZ Domain
Number of amino acids: Translated: 599; Mature: 598
Protein sequence:
>599_residues MTQPIRYSIVPKDLAAHLFEVTVTVADPDPEGQRFSLPVWIPGSYLVREFARNIVTLRAFNDAGRKVRIAKTDKHTWQAA PVTGALTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAGAAFRTWRVGTALPEAGGTRRYGF GAYRAANYDELSDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDLERLRTDLKRVCEAQIALFEPKSKKAPMDRYVFMT LAVSDGYGGLEHRASTALICNRTDLPVKGRPETTEGYRTYLGLCSHEYFHTWNVKRIKPAAFVPYDLTRENYTSLLWLFE GFTSYYDDLMLVRSGLMSQDDYFAALGRTIGGVLRGTGRLKQSVAESSFDAWIKYYRQDENATNAIVSYYTKGSLVALAF DLAIRAQTRNRKSLDDVMRLLWQRYGRDFYRGKQAGVDENEVEALIEEATGVALGRLFADAVHGTRDLPLGELLAPFGVT LAPDVATGAAAKPTIGARLRGGADCTLAAVYEGGAAHRAGLSAGDTLIAVDGLRVTGTNLDALLARYRPGDKVEIHAFRR DELRTAKLKLDGPEVTRYRLTAAAKPAAATKAREAWLKG
Sequences:
>Translated_599_residues MTQPIRYSIVPKDLAAHLFEVTVTVADPDPEGQRFSLPVWIPGSYLVREFARNIVTLRAFNDAGRKVRIAKTDKHTWQAA PVTGALTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAGAAFRTWRVGTALPEAGGTRRYGF GAYRAANYDELSDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDLERLRTDLKRVCEAQIALFEPKSKKAPMDRYVFMT LAVSDGYGGLEHRASTALICNRTDLPVKGRPETTEGYRTYLGLCSHEYFHTWNVKRIKPAAFVPYDLTRENYTSLLWLFE GFTSYYDDLMLVRSGLMSQDDYFAALGRTIGGVLRGTGRLKQSVAESSFDAWIKYYRQDENATNAIVSYYTKGSLVALAF DLAIRAQTRNRKSLDDVMRLLWQRYGRDFYRGKQAGVDENEVEALIEEATGVALGRLFADAVHGTRDLPLGELLAPFGVT LAPDVATGAAAKPTIGARLRGGADCTLAAVYEGGAAHRAGLSAGDTLIAVDGLRVTGTNLDALLARYRPGDKVEIHAFRR DELRTAKLKLDGPEVTRYRLTAAAKPAAATKAREAWLKG >Mature_598_residues TQPIRYSIVPKDLAAHLFEVTVTVADPDPEGQRFSLPVWIPGSYLVREFARNIVTLRAFNDAGRKVRIAKTDKHTWQAAP VTGALTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAGAAFRTWRVGTALPEAGGTRRYGFG AYRAANYDELSDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDLERLRTDLKRVCEAQIALFEPKSKKAPMDRYVFMTL AVSDGYGGLEHRASTALICNRTDLPVKGRPETTEGYRTYLGLCSHEYFHTWNVKRIKPAAFVPYDLTRENYTSLLWLFEG FTSYYDDLMLVRSGLMSQDDYFAALGRTIGGVLRGTGRLKQSVAESSFDAWIKYYRQDENATNAIVSYYTKGSLVALAFD LAIRAQTRNRKSLDDVMRLLWQRYGRDFYRGKQAGVDENEVEALIEEATGVALGRLFADAVHGTRDLPLGELLAPFGVTL APDVATGAAAKPTIGARLRGGADCTLAAVYEGGAAHRAGLSAGDTLIAVDGLRVTGTNLDALLARYRPGDKVEIHAFRRD ELRTAKLKLDGPEVTRYRLTAAAKPAAATKAREAWLKG
Specific function: Unknown
COG id: COG3975
COG function: function code R; Predicted protease with the C-terminal PDZ domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65946; Mature: 65815
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQPIRYSIVPKDLAAHLFEVTVTVADPDPEGQRFSLPVWIPGSYLVREFARNIVTLRAF CCCCEEEEECCHHHHHEEEEEEEEEECCCCCCCEEEEEEEECHHHHHHHHHHHEEEEEEE NDAGRKVRIAKTDKHTWQAAPVTGALTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSV CCCCCEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHHCCCCCCEEEHEEEEEEE AGREDAPCEVDIAKPAGAAFRTWRVGTALPEAGGTRRYGFGAYRAANYDELSDHPVTIGE CCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHH FALATFDAHGVPHDIVIAGRVTQLDLERLRTDLKRVCEAQIALFEPKSKKAPMDRYVFMT HEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEE LAVSDGYGGLEHRASTALICNRTDLPVKGRPETTEGYRTYLGLCSHEYFHTWNVKRIKPA EEEECCCCCCHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCEEECCC AFVPYDLTRENYTSLLWLFEGFTSYYDDLMLVRSGLMSQDDYFAALGRTIGGVLRGTGRL EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH KQSVAESSFDAWIKYYRQDENATNAIVSYYTKGSLVALAFDLAIRAQTRNRKSLDDVMRL HHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCEEEEEEEHHHEECCCCCCCHHHHHHH LWQRYGRDFYRGKQAGVDENEVEALIEEATGVALGRLFADAVHGTRDLPLGELLAPFGVT HHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCE LAPDVATGAAAKPTIGARLRGGADCTLAAVYEGGAAHRAGLSAGDTLIAVDGLRVTGTNL ECCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCHHHCCCCCCCEEEEECCEEEECCCH DALLARYRPGDKVEIHAFRRDELRTAKLKLDGPEVTRYRLTAAAKPAAATKAREAWLKG HHHHHHCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCC >Mature Secondary Structure TQPIRYSIVPKDLAAHLFEVTVTVADPDPEGQRFSLPVWIPGSYLVREFARNIVTLRAF CCCEEEEECCHHHHHEEEEEEEEEECCCCCCCEEEEEEEECHHHHHHHHHHHEEEEEEE NDAGRKVRIAKTDKHTWQAAPVTGALTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSV CCCCCEEEEEECCCCCEEECCCCEEEEEEEEEEEEEEEHHHHHCCCCCCEEEHEEEEEEE AGREDAPCEVDIAKPAGAAFRTWRVGTALPEAGGTRRYGFGAYRAANYDELSDHPVTIGE CCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHH FALATFDAHGVPHDIVIAGRVTQLDLERLRTDLKRVCEAQIALFEPKSKKAPMDRYVFMT HEEEEEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEEEEE LAVSDGYGGLEHRASTALICNRTDLPVKGRPETTEGYRTYLGLCSHEYFHTWNVKRIKPA EEEECCCCCCHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCEEECCC AFVPYDLTRENYTSLLWLFEGFTSYYDDLMLVRSGLMSQDDYFAALGRTIGGVLRGTGRL EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHH KQSVAESSFDAWIKYYRQDENATNAIVSYYTKGSLVALAFDLAIRAQTRNRKSLDDVMRL HHHHHHHHHHHHHHHHHCCCCHHHHHHEEECCCCEEEEEEEHHHEECCCCCCCHHHHHHH LWQRYGRDFYRGKQAGVDENEVEALIEEATGVALGRLFADAVHGTRDLPLGELLAPFGVT HHHHHCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCE LAPDVATGAAAKPTIGARLRGGADCTLAAVYEGGAAHRAGLSAGDTLIAVDGLRVTGTNL ECCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCHHHCCCCCCCEEEEECCEEEECCCH DALLARYRPGDKVEIHAFRRDELRTAKLKLDGPEVTRYRLTAAAKPAAATKAREAWLKG HHHHHHCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA