| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116688508
Identifier: 116688508
GI number: 116688508
Start: 539831
End: 540820
Strand: Reverse
Name: 116688508
Synonym: Bcen2424_0484
Alternate gene names: NA
Gene position: 540820-539831 (Counterclockwise)
Preceding gene: 116688509
Following gene: 116688507
Centisome position: 15.52
GC content: 67.47
Gene sequence:
>990_bases ATGACGCAAACCGTACAGGCGCAAATCGCCTACTTCGGCAAGATTCCGTCGCGCGGCGACTTCGTGAAGAGCGCGCACAA TCCGCAACTGCTGCAGACGCTCGATCGCTGGATCGCGCAGGCGCTGGAGCTGCTCGCGGAAGATCCGCGCTGGAAGATCG TCTACGAGGACGCGAAGCCGATGCATTTCGCGTTCCTCGGCTCGCGCAGCAAGCTCGCGATCGCGGGCCACATGGTCGCG AGCCACGACGTGTCGATGCGCCGCTTCCCGTTCCTCGGCGCGACCGCGCTCGAGGTCGACCGGCCGCTCGCGTTCCTCGC GCGCAGCCCGCTCGCGTTCGCGCGGCTGTGGTCGCGCGTCGCCGCGCAGATCCCGCCGCTGCTCGGCAAGGACGAGCCGC CCGGCGCGCTGCAGGCGCTCGGCGACACGCAGGTGCCGATCGACATCGGCGGCCCCGGCACGTCGCATGACGGCACCTTC AACGATTTCGTCGAACACCAGACGCTGTACGGCCTGCAGGAGATGTTGCTCGAAAGCGGTCATCCGGTGCGGCTGCGCGG CGCGATGCTCGCGCTCGGCTCGCTGCTGCGCCCGGTGATGCAGAGCGGCTCGTCGCACATCGAGCGCGGCCTCACGCTGC CGCTGCCGGTCGACCCGTTCTACCGCAGCCTCGTCGCCGCGTTCTGGCTCGAACTGATCGCGCCGTTCGTCGCGCAGGCC GACTTCGAGCTTGCGATCTTCATCGGCACGATCGCCGAACGCGAACGGCTCGTCATCGGCTTCAACGGCGCGTCGGCGAA GACGCTGCTGAGCGTCGTCGACCCGCAGACCTACGCCGCCCACAACATCGACATCGACGATCCCGAGTGGATCGACGCCC ATGCGCAAAACGATCACCAGATCAGCAAGCTCGTCAGCTACCTCGAACAACCGCAACTCTCGCTGCGCGTCGCCATCGAC GCGTTCCGCGAAGCGTTCATCGGAGGCTGA
Upstream 100 bases:
>100_bases GCGCGGGCGCCGCGCAGAACGCGACGCAAGCCGGCACCGGCACGCCGGGCGCCGCGCCGGCCGTCGCGGCCGCCAACGCA ACGAATGCACAGAGGGCGCA
Downstream 100 bases:
>100_bases CGGCATGCATCGCACGATTCAGGTCCGGCGCGCGCGCCTGTCGGCCGCCGTCTCGCCCGCCCTCGCCGCGCTGTTCGCGG CCGGCCTCGTCGCGAGCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDRWIAQALELLAEDPRWKIVYEDAKPMHFAFLGSRSKLAIAGHMVA SHDVSMRRFPFLGATALEVDRPLAFLARSPLAFARLWSRVAAQIPPLLGKDEPPGALQALGDTQVPIDIGGPGTSHDGTF NDFVEHQTLYGLQEMLLESGHPVRLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWLELIAPFVAQA DFELAIFIGTIAERERLVIGFNGASAKTLLSVVDPQTYAAHNIDIDDPEWIDAHAQNDHQISKLVSYLEQPQLSLRVAID AFREAFIGG
Sequences:
>Translated_329_residues MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDRWIAQALELLAEDPRWKIVYEDAKPMHFAFLGSRSKLAIAGHMVA SHDVSMRRFPFLGATALEVDRPLAFLARSPLAFARLWSRVAAQIPPLLGKDEPPGALQALGDTQVPIDIGGPGTSHDGTF NDFVEHQTLYGLQEMLLESGHPVRLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWLELIAPFVAQA DFELAIFIGTIAERERLVIGFNGASAKTLLSVVDPQTYAAHNIDIDDPEWIDAHAQNDHQISKLVSYLEQPQLSLRVAID AFREAFIGG >Mature_328_residues TQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDRWIAQALELLAEDPRWKIVYEDAKPMHFAFLGSRSKLAIAGHMVAS HDVSMRRFPFLGATALEVDRPLAFLARSPLAFARLWSRVAAQIPPLLGKDEPPGALQALGDTQVPIDIGGPGTSHDGTFN DFVEHQTLYGLQEMLLESGHPVRLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWLELIAPFVAQAD FELAIFIGTIAERERLVIGFNGASAKTLLSVVDPQTYAAHNIDIDDPEWIDAHAQNDHQISKLVSYLEQPQLSLRVAIDA FREAFIGG
Specific function: Unknown
COG id: COG3913
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36204; Mature: 36073
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDRWIAQALELLAEDPRWKIVYEDAKP CCCCHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC MHFAFLGSRSKLAIAGHMVASHDVSMRRFPFLGATALEVDRPLAFLARSPLAFARLWSRV EEEEEECCCCCEEEEEHHHHHCCCCHHHCCCCCCHHHHHCCCHHHHHCCCHHHHHHHHHH AAQIPPLLGKDEPPGALQALGDTQVPIDIGGPGTSHDGTFNDFVEHQTLYGLQEMLLESG HHHCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC HPVRLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWLELIAPFVAQA CCEEHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC DFELAIFIGTIAERERLVIGFNGASAKTLLSVVDPQTYAAHNIDIDDPEWIDAHAQNDHQ CCEEEEEEEECCCCCEEEEEECCCCHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCHHH ISKLVSYLEQPQLSLRVAIDAFREAFIGG HHHHHHHHHCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure TQTVQAQIAYFGKIPSRGDFVKSAHNPQLLQTLDRWIAQALELLAEDPRWKIVYEDAKP CCCHHHHHHHHCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCC MHFAFLGSRSKLAIAGHMVASHDVSMRRFPFLGATALEVDRPLAFLARSPLAFARLWSRV EEEEEECCCCCEEEEEHHHHHCCCCHHHCCCCCCHHHHHCCCHHHHHCCCHHHHHHHHHH AAQIPPLLGKDEPPGALQALGDTQVPIDIGGPGTSHDGTFNDFVEHQTLYGLQEMLLESG HHHCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC HPVRLRGAMLALGSLLRPVMQSGSSHIERGLTLPLPVDPFYRSLVAAFWLELIAPFVAQA CCEEHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC DFELAIFIGTIAERERLVIGFNGASAKTLLSVVDPQTYAAHNIDIDDPEWIDAHAQNDHQ CCEEEEEEEECCCCCEEEEEECCCCHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCCCHHH ISKLVSYLEQPQLSLRVAIDAFREAFIGG HHHHHHHHHCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA