| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688479
Identifier: 116688479
GI number: 116688479
Start: 501276
End: 502160
Strand: Direct
Name: 116688479
Synonym: Bcen2424_0455
Alternate gene names: NA
Gene position: 501276-502160 (Clockwise)
Preceding gene: 116688478
Following gene: 116688480
Centisome position: 14.39
GC content: 51.3
Gene sequence:
>885_bases ATGACCAATCTTCCTGACCGCATCCGTCTACTTGCCAGTGCATTCACGCGCCCAGTATTTGCTGCGATGGCCCGCACTGG AGACCACGACGTCCCTTTGAGGGCGCTCGTAAAGGCTGGCGTCCTGAAAACTCACCGAGATGACCGGCAGCCCCTTTCAT CTGTATTTGACGAGGCTTGGGACCACATCGCGCGGACATATCGCAACGAGTACGTTTACAAGAATGATTTGGCGAGCCGC TTGGTGTTCGGTCGACACAGCCCAAGAACCGCTAGCTTTCAGGTTGAATTGCCAGTGGGGCGATCCATTGTTGACGTTGC GGTAGCTAACGGAACGACCACTGCTTATGAGATTAAAACTGAGTATGACACGGCAAAACGCTTAAAGACTCAGACGTACG ACTACCTCCAGGCGTTCGACCGAGTATTCGTCGTAACCCATCCTGCACATCTCAAGCGGTTCGAGAGTGAGGTGGATTCG CGCGTGGGATTAATATCTCTTTCGACGAAAGGTACATTGTCAATTCGGCGCGAGGCGCATTCTAATTTGGAGCGACTTGA TAGCGCAACCATTTTTCGGTGTCTGCGGCAATCTGAATATCTTGACGCGATCGAGATGCTTTTCGGAGAACGACCGTCGT TACCAAACGGACTCATTGGAGCCTACTGTGAAAAATTGTTTTCGACCGTCTCCTCGGAAGATGCACATCGAATTTTCGTC AATGCGCTCCGTGCTCGGACAACAGATAGTAATACAGTCGGATTTGTCTCACAACTGCCTACCTCGCTTCGTGCGCTAGG ATATGCTACACCCTTGTCAGGACGGCAGCGCAGTAATATATTAGCTTTGCTTTCAAAGCCGGTAGGGCTAACTGTGGTAG TGTGA
Upstream 100 bases:
>100_bases CATTGAAACTTGGAGGGGGCCGCTGTGATTGCCGGCACTTTGGATACGAACTGGTTGCGGTTGCTTTGCACCCTGCGGCT CTACTACAATTTGATGCGAA
Downstream 100 bases:
>100_bases TTCTTAAAATAGCTGAAAAAATCGAAACAGACCAAACTGCAACGCTACTTATCGAGGGGACTTATGTATCTTCCGTTTGT CTTTGGGCGACAGTCCGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MTNLPDRIRLLASAFTRPVFAAMARTGDHDVPLRALVKAGVLKTHRDDRQPLSSVFDEAWDHIARTYRNEYVYKNDLASR LVFGRHSPRTASFQVELPVGRSIVDVAVANGTTTAYEIKTEYDTAKRLKTQTYDYLQAFDRVFVVTHPAHLKRFESEVDS RVGLISLSTKGTLSIRREAHSNLERLDSATIFRCLRQSEYLDAIEMLFGERPSLPNGLIGAYCEKLFSTVSSEDAHRIFV NALRARTTDSNTVGFVSQLPTSLRALGYATPLSGRQRSNILALLSKPVGLTVVV
Sequences:
>Translated_294_residues MTNLPDRIRLLASAFTRPVFAAMARTGDHDVPLRALVKAGVLKTHRDDRQPLSSVFDEAWDHIARTYRNEYVYKNDLASR LVFGRHSPRTASFQVELPVGRSIVDVAVANGTTTAYEIKTEYDTAKRLKTQTYDYLQAFDRVFVVTHPAHLKRFESEVDS RVGLISLSTKGTLSIRREAHSNLERLDSATIFRCLRQSEYLDAIEMLFGERPSLPNGLIGAYCEKLFSTVSSEDAHRIFV NALRARTTDSNTVGFVSQLPTSLRALGYATPLSGRQRSNILALLSKPVGLTVVV >Mature_293_residues TNLPDRIRLLASAFTRPVFAAMARTGDHDVPLRALVKAGVLKTHRDDRQPLSSVFDEAWDHIARTYRNEYVYKNDLASRL VFGRHSPRTASFQVELPVGRSIVDVAVANGTTTAYEIKTEYDTAKRLKTQTYDYLQAFDRVFVVTHPAHLKRFESEVDSR VGLISLSTKGTLSIRREAHSNLERLDSATIFRCLRQSEYLDAIEMLFGERPSLPNGLIGAYCEKLFSTVSSEDAHRIFVN ALRARTTDSNTVGFVSQLPTSLRALGYATPLSGRQRSNILALLSKPVGLTVVV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32890; Mature: 32759
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLPDRIRLLASAFTRPVFAAMARTGDHDVPLRALVKAGVLKTHRDDRQPLSSVFDEAW CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH DHIARTYRNEYVYKNDLASRLVFGRHSPRTASFQVELPVGRSIVDVAVANGTTTAYEIKT HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEE EYDTAKRLKTQTYDYLQAFDRVFVVTHPAHLKRFESEVDSRVGLISLSTKGTLSIRREAH HHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHH SNLERLDSATIFRCLRQSEYLDAIEMLFGERPSLPNGLIGAYCEKLFSTVSSEDAHRIFV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH NALRARTTDSNTVGFVSQLPTSLRALGYATPLSGRQRSNILALLSKPVGLTVVV HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEC >Mature Secondary Structure TNLPDRIRLLASAFTRPVFAAMARTGDHDVPLRALVKAGVLKTHRDDRQPLSSVFDEAW CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH DHIARTYRNEYVYKNDLASRLVFGRHSPRTASFQVELPVGRSIVDVAVANGTTTAYEIKT HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEE EYDTAKRLKTQTYDYLQAFDRVFVVTHPAHLKRFESEVDSRVGLISLSTKGTLSIRREAH HHHHHHHHHHHHHHHHHHHHHEEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHH SNLERLDSATIFRCLRQSEYLDAIEMLFGERPSLPNGLIGAYCEKLFSTVSSEDAHRIFV HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHH NALRARTTDSNTVGFVSQLPTSLRALGYATPLSGRQRSNILALLSKPVGLTVVV HHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA