| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688349
Identifier: 116688349
GI number: 116688349
Start: 370164
End: 370985
Strand: Reverse
Name: 116688349
Synonym: Bcen2424_0325
Alternate gene names: NA
Gene position: 370985-370164 (Counterclockwise)
Preceding gene: 116688350
Following gene: 116688348
Centisome position: 10.65
GC content: 71.9
Gene sequence:
>822_bases ATGAGTACCATTCATGTGATTCAGGGCGGCACCGCCGCCGCGTCGCTGCGCGAGGCCCTTGCGCAAGCCGGACGCGACGA GCGCGTCGTCGGGTTGCTCGACGATCTCGGCGTCGGGCCGCTGAAGGGCGTCGACGAGACGCCCGACACGCGCGCCGCCT TCTGGCAGCACGTGCTCGGCGACCAGATTCCCGACTGGAACGCGGAAATCGAGGCCGAATTCGCACGCCTCGACCAGCTC GCGACGGATGCCGGCCAGGTCGTCGTGTGGCACGCGCCGAGCGTCGGCGACAAGCTGCTGCTGCGCCGCGTCGCCTATCA CCTGCGCAACGTGCCGCAACGCCTGAACGAGGTACGGCTGTCGGCCGCCGACCTCGACGCCGCGCCGCGCGCAGCGCTGT CGCGCACCGACCAGGCGTGCTCGACCGGGATGTTCTCGCCCGCGGAACTGGCGCGCAAGCGGCCGGCGGCCGCGCCGGTC TCGGTCCTGCGCATCGGCCGCCTCGCGCTCGAATGGCAGGAGGCGAAGCATCTGAACGCCGAACTGCGTTATTGGGTCAG CAACACGATCAAGAGCGGCCACTACGCCGATCTCGACGCGCTGATCGTCGCGCGCGCGGCAGCCGACTGGCAGCCTGCGC GGCGCCTCGTCGGCAGCATCATGGCCGCCGCCGACCGCGGCGGCCTGTTCGTCAGCGACGCGATCGCGTGGTGGCGCTGC CGCGAACTCGCGGCAGCCGGCCGGCTCGAGCTACAGGACGACGCGCCCGACGCCCTCTCTTCCACGCAGGTGCGTGCGGC CCGTGCCGCCGCGCACCGCTAA
Upstream 100 bases:
>100_bases TTCTCGTCGTCACACATCTCGCTTACACTAGGGGCCGCCGGCCGGCTGGACATCGCAACGTCCGCCCGGCCGGCGGTTTT CTTTTGTTGACGACAGGCCG
Downstream 100 bases:
>100_bases TCTTCCGCATTCGACCATGGCCCGAACCCGAGCGCCCGACCACGAATCCCAGCGCGAGCAGATCCTCGATCTGGCCGCCG AGAAATTCGCGCAGACGAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 273; Mature: 272
Protein sequence:
>273_residues MSTIHVIQGGTAAASLREALAQAGRDERVVGLLDDLGVGPLKGVDETPDTRAAFWQHVLGDQIPDWNAEIEAEFARLDQL ATDAGQVVVWHAPSVGDKLLLRRVAYHLRNVPQRLNEVRLSAADLDAAPRAALSRTDQACSTGMFSPAELARKRPAAAPV SVLRIGRLALEWQEAKHLNAELRYWVSNTIKSGHYADLDALIVARAAADWQPARRLVGSIMAAADRGGLFVSDAIAWWRC RELAAAGRLELQDDAPDALSSTQVRAARAAAHR
Sequences:
>Translated_273_residues MSTIHVIQGGTAAASLREALAQAGRDERVVGLLDDLGVGPLKGVDETPDTRAAFWQHVLGDQIPDWNAEIEAEFARLDQL ATDAGQVVVWHAPSVGDKLLLRRVAYHLRNVPQRLNEVRLSAADLDAAPRAALSRTDQACSTGMFSPAELARKRPAAAPV SVLRIGRLALEWQEAKHLNAELRYWVSNTIKSGHYADLDALIVARAAADWQPARRLVGSIMAAADRGGLFVSDAIAWWRC RELAAAGRLELQDDAPDALSSTQVRAARAAAHR >Mature_272_residues STIHVIQGGTAAASLREALAQAGRDERVVGLLDDLGVGPLKGVDETPDTRAAFWQHVLGDQIPDWNAEIEAEFARLDQLA TDAGQVVVWHAPSVGDKLLLRRVAYHLRNVPQRLNEVRLSAADLDAAPRAALSRTDQACSTGMFSPAELARKRPAAAPVS VLRIGRLALEWQEAKHLNAELRYWVSNTIKSGHYADLDALIVARAAADWQPARRLVGSIMAAADRGGLFVSDAIAWWRCR ELAAAGRLELQDDAPDALSSTQVRAARAAAHR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29580; Mature: 29449
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTIHVIQGGTAAASLREALAQAGRDERVVGLLDDLGVGPLKGVDETPDTRAAFWQHVLG CCEEEEECCCHHHHHHHHHHHHCCCCCCEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHHC DQIPDWNAEIEAEFARLDQLATDAGQVVVWHAPSVGDKLLLRRVAYHLRNVPQRLNEVRL CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH SAADLDAAPRAALSRTDQACSTGMFSPAELARKRPAAAPVSVLRIGRLALEWQEAKHLNA HHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCH ELRYWVSNTIKSGHYADLDALIVARAAADWQPARRLVGSIMAAADRGGLFVSDAIAWWRC HHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH RELAAAGRLELQDDAPDALSSTQVRAARAAAHR HHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure STIHVIQGGTAAASLREALAQAGRDERVVGLLDDLGVGPLKGVDETPDTRAAFWQHVLG CEEEEECCCHHHHHHHHHHHHCCCCCCEEEHHHHCCCCCCCCCCCCCCHHHHHHHHHHC DQIPDWNAEIEAEFARLDQLATDAGQVVVWHAPSVGDKLLLRRVAYHLRNVPQRLNEVRL CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH SAADLDAAPRAALSRTDQACSTGMFSPAELARKRPAAAPVSVLRIGRLALEWQEAKHLNA HHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCH ELRYWVSNTIKSGHYADLDALIVARAAADWQPARRLVGSIMAAADRGGLFVSDAIAWWRC HHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH RELAAAGRLELQDDAPDALSSTQVRAARAAAHR HHHHHCCCCEECCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA