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The map label for this gene is ykfC [H]

Identifier: 116688312

GI number: 116688312

Start: 329811

End: 331178

Strand: Direct

Name: ykfC [H]

Synonym: Bcen2424_0288

Alternate gene names: 116688312

Gene position: 329811-331178 (Clockwise)

Preceding gene: 116688311

Following gene: 116688314

Centisome position: 9.47

GC content: 63.52

Gene sequence:

>1368_bases
ATGTCGATGCGACAGGCAATGCGTCAGATGCCCGTGCGAGCGGGGCGAGCGGGAAGCATACGCGGTGAAGCTGCGTCTAT
GCCCGTGAGCGACGAAGGCTGTTGCCCGCGCCATGAATCCGGGGACACAGGGTCACCGCTGCTGATGGCGGCGCTGACGA
GGGAGAACCTGAAGCAGGCGTTCAAACGGGTACGGGCCAACAAGGGAGCCGCTGGCGTGGACGGTCTGAATATTGACCAG
ACGTCGCGCCATCTGGTGACGGCGTGGCCCGCGATCCGTGAACAGTTGCTGAAGGGGACGTACCGGCCCAGTCCGGTACG
GCGGGTGACGATTCCGAAACCGGACGGAGGCGAGCGCGAGCTTGGCATCCCGACGGTGACGGACCGGCTGATCCAGCAGG
CGCTGCTGCAGGTGCTGCAACCGGTTCTGGACCCTGGCTTCAGCGAGCACAGCTACGGCTTCCGGCCTGGACGGCGTGCG
CACGATGCGGTGCTTGCCGCGCAGTCGTACGTGCAGTCGGGTCGGCGAATCGTGGTGGATGTTGATCTGGAGAAGTTCTT
CGACCGGGTCAACCACGACATCCTGATCGACCGACTGCAGAAACGTATTGGGGACGCCAGCGTGATCTGGCTGATCCGGG
CGTATCTGAACAGCGGCATCATGGATGGCGGCGTGGTTCAGCAGCGCGAACAGGGCACGCCACAGGGCGGGCCGCTATCG
CCGTTGCTGGCCAACGTGTTGCTCGATGAGGTGGACAAGGAACTGGAGCGGCGAGGCCACTGCTTCGCGCGCTATGCCGA
CGATGCGAATGTCTATGTTCGTAGCCGCCGTGCTGGCGAGCGGGTGATGGCGCTGCTGCGTCGTCTGTATGGGCAACTGC
GGTTGAAGGTCAACGAGACCAAAAGCGCAGTCGCCAGTGTGTTCGGTCGCAAGTTTCTGGGCTACAGCCTATGGGTAGCG
TCCGGCGGTGTCATCAAGCGCAAGGTGGCGGCCAGACCGCTGCTGGCGTTCAAACGCCGCATTCGTGAACTGACCGGCCG
TAGCGGCGGGCGCAGCATGAAGGACGTGGTGGAACGGTTACGGCCTTATGTATTGGGCTGGAAGGCGTACTTCCGGATGG
CGCAGACGCCACGAGTCTGGCTGGATCTGGACAAGTGGATGCGTCACCGGCTGCGTGTCATCCAGCTCAAACACTGGCGC
CGCGGTCCGACTATCTACCGGGAACTGCGTGCGCTGGGCGCACCGTCCGCTGTGGCGCAACAGGTGGCGGCGAACAGCTG
TCGCTGGTGGCGTAATAGCGGCAAGCTTCTGAATAGCGTATTGACCCTCGCGTACTTCGACCGGCTGGGTGTGCCCCGAC
TCTCATAA

Upstream 100 bases:

>100_bases
GCCGGAGCGAGAAGTCAGCAGAGGTCGTAGTAGTCACAGGACAGGTCGATGAGGCTGAAGCTGGTGACGAAGGGCCGAAC
GGGAAGGAGTGTCCAGCGTC

Downstream 100 bases:

>100_bases
CCTCAACTTCCCGAACCGCCCGGTGCGGACCCGCATGCCGGGTGGTGTGGCAGGGGTACGGCCTCATGGTCGTCCCCTAT
GCCGATTCCGCGCGGCGGCG

Product: RNA-directed DNA polymerase (Reverse transcriptase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MSMRQAMRQMPVRAGRAGSIRGEAASMPVSDEGCCPRHESGDTGSPLLMAALTRENLKQAFKRVRANKGAAGVDGLNIDQ
TSRHLVTAWPAIREQLLKGTYRPSPVRRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPVLDPGFSEHSYGFRPGRRA
HDAVLAAQSYVQSGRRIVVDVDLEKFFDRVNHDILIDRLQKRIGDASVIWLIRAYLNSGIMDGGVVQQREQGTPQGGPLS
PLLANVLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGQLRLKVNETKSAVASVFGRKFLGYSLWVA
SGGVIKRKVAARPLLAFKRRIRELTGRSGGRSMKDVVERLRPYVLGWKAYFRMAQTPRVWLDLDKWMRHRLRVIQLKHWR
RGPTIYRELRALGAPSAVAQQVAANSCRWWRNSGKLLNSVLTLAYFDRLGVPRLS

Sequences:

>Translated_455_residues
MSMRQAMRQMPVRAGRAGSIRGEAASMPVSDEGCCPRHESGDTGSPLLMAALTRENLKQAFKRVRANKGAAGVDGLNIDQ
TSRHLVTAWPAIREQLLKGTYRPSPVRRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPVLDPGFSEHSYGFRPGRRA
HDAVLAAQSYVQSGRRIVVDVDLEKFFDRVNHDILIDRLQKRIGDASVIWLIRAYLNSGIMDGGVVQQREQGTPQGGPLS
PLLANVLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGQLRLKVNETKSAVASVFGRKFLGYSLWVA
SGGVIKRKVAARPLLAFKRRIRELTGRSGGRSMKDVVERLRPYVLGWKAYFRMAQTPRVWLDLDKWMRHRLRVIQLKHWR
RGPTIYRELRALGAPSAVAQQVAANSCRWWRNSGKLLNSVLTLAYFDRLGVPRLS
>Mature_454_residues
SMRQAMRQMPVRAGRAGSIRGEAASMPVSDEGCCPRHESGDTGSPLLMAALTRENLKQAFKRVRANKGAAGVDGLNIDQT
SRHLVTAWPAIREQLLKGTYRPSPVRRVTIPKPDGGERELGIPTVTDRLIQQALLQVLQPVLDPGFSEHSYGFRPGRRAH
DAVLAAQSYVQSGRRIVVDVDLEKFFDRVNHDILIDRLQKRIGDASVIWLIRAYLNSGIMDGGVVQQREQGTPQGGPLSP
LLANVLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGQLRLKVNETKSAVASVFGRKFLGYSLWVAS
GGVIKRKVAARPLLAFKRRIRELTGRSGGRSMKDVVERLRPYVLGWKAYFRMAQTPRVWLDLDKWMRHRLRVIQLKHWRR
GPTIYRELRALGAPSAVAQQVAANSCRWWRNSGKLLNSVLTLAYFDRLGVPRLS

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=202, Percent_Identity=30.1980198019802, Blast_Score=120, Evalue=5e-28,
Organism=Saccharomyces cerevisiae, GI6226520, Length=208, Percent_Identity=29.8076923076923, Blast_Score=111, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 51282; Mature: 51151

Theoretical pI: Translated: 11.46; Mature: 11.46

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMRQAMRQMPVRAGRAGSIRGEAASMPVSDEGCCPRHESGDTGSPLLMAALTRENLKQA
CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
FKRVRANKGAAGVDGLNIDQTSRHLVTAWPAIREQLLKGTYRPSPVRRVTIPKPDGGERE
HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC
LGIPTVTDRLIQQALLQVLQPVLDPGFSEHSYGFRPGRRAHDAVLAAQSYVQSGRRIVVD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
VDLEKFFDRVNHDILIDRLQKRIGDASVIWLIRAYLNSGIMDGGVVQQREQGTPQGGPLS
ECHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHH
PLLANVLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGQLRLKVNET
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHEEEEHHH
KSAVASVFGRKFLGYSLWVASGGVIKRKVAARPLLAFKRRIRELTGRSGGRSMKDVVERL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
RPYVLGWKAYFRMAQTPRVWLDLDKWMRHRLRVIQLKHWRRGPTIYRELRALGAPSAVAQ
HHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
QVAANSCRWWRNSGKLLNSVLTLAYFDRLGVPRLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SMRQAMRQMPVRAGRAGSIRGEAASMPVSDEGCCPRHESGDTGSPLLMAALTRENLKQA
CHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
FKRVRANKGAAGVDGLNIDQTSRHLVTAWPAIREQLLKGTYRPSPVRRVTIPKPDGGERE
HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCC
LGIPTVTDRLIQQALLQVLQPVLDPGFSEHSYGFRPGRRAHDAVLAAQSYVQSGRRIVVD
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEE
VDLEKFFDRVNHDILIDRLQKRIGDASVIWLIRAYLNSGIMDGGVVQQREQGTPQGGPLS
ECHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCHH
PLLANVLLDEVDKELERRGHCFARYADDANVYVRSRRAGERVMALLRRLYGQLRLKVNET
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHEEEEHHH
KSAVASVFGRKFLGYSLWVASGGVIKRKVAARPLLAFKRRIRELTGRSGGRSMKDVVERL
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
RPYVLGWKAYFRMAQTPRVWLDLDKWMRHRLRVIQLKHWRRGPTIYRELRALGAPSAVAQ
HHHHHHHHHHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHH
QVAANSCRWWRNSGKLLNSVLTLAYFDRLGVPRLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]