| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
Click here to switch to the map view.
The map label for this gene is 116688243
Identifier: 116688243
GI number: 116688243
Start: 248036
End: 248614
Strand: Direct
Name: 116688243
Synonym: Bcen2424_0219
Alternate gene names: NA
Gene position: 248036-248614 (Clockwise)
Preceding gene: 116688241
Following gene: 116688244
Centisome position: 7.12
GC content: 56.3
Gene sequence:
>579_bases ATGTCTGCGGAGCTGCGCGAGATGGTCGAACAGGTATTGTGTGACGCAGGGGTATCCATCCAGTCCGACAAGACGTTCGA GTCAGCACTTCGTAGCTACCACGAGCTGGTGCAAAAGCGCCTTGCGCAGCGGTTTCCGCAAGCTACAGTGGCAGACCAAG TACGCGCCGTTCGCCAGTCGATGGTGGAACTTGATGCTAGCTTGGAACGCAGATTGCCTACCTTGCAGGCGATGCGCCAC TGGATTGACTTAGGGCGCTCTCCCGACACCCCCTTCGAGCAATTAAGGCCGCAAGCGCCAAATCGCGAAGATGTATTCAA AGCCTTCGCGGAGGTGCTCGGCTTTTCCACACTTGAAGCTGCCTATCATTGGCAGCGTGTCATCACGGCTGTCCGCACCT CGCGCCGGCTAGACGGACGCCATGTTTCCGACATCTACGCATACATGCTCTTGCAGCCCGAGTCGGTTATGGCTCATTCC AGCATCAGAAGGAAGACGCTTCAACAGTTGTTCGACAAGGCACGTGAGAACGTTGCTACCGTCGAAATCGTTGGCCCCCT GAAGGAGTCGAAAGAATGA
Upstream 100 bases:
>100_bases GGACATGTACATCTATGAGCCGGCTTCGCAACATGCCACTGAAGCGGGATTCAGGACGTGTCAGGTACGCTCTTTGGAAG TCGGAGACAGGGTCTTCCTG
Downstream 100 bases:
>100_bases GCCAGTCTGTTTTGCGCGCTGACCCTGCGAAAATCTCCCCCACGCTGAAGGAGGCGGTGGTCGACAGTCTCCTCAACTTG ACTTATGCGCAACTCAGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 192; Mature: 191
Protein sequence:
>192_residues MSAELREMVEQVLCDAGVSIQSDKTFESALRSYHELVQKRLAQRFPQATVADQVRAVRQSMVELDASLERRLPTLQAMRH WIDLGRSPDTPFEQLRPQAPNREDVFKAFAEVLGFSTLEAAYHWQRVITAVRTSRRLDGRHVSDIYAYMLLQPESVMAHS SIRRKTLQQLFDKARENVATVEIVGPLKESKE
Sequences:
>Translated_192_residues MSAELREMVEQVLCDAGVSIQSDKTFESALRSYHELVQKRLAQRFPQATVADQVRAVRQSMVELDASLERRLPTLQAMRH WIDLGRSPDTPFEQLRPQAPNREDVFKAFAEVLGFSTLEAAYHWQRVITAVRTSRRLDGRHVSDIYAYMLLQPESVMAHS SIRRKTLQQLFDKARENVATVEIVGPLKESKE >Mature_191_residues SAELREMVEQVLCDAGVSIQSDKTFESALRSYHELVQKRLAQRFPQATVADQVRAVRQSMVELDASLERRLPTLQAMRHW IDLGRSPDTPFEQLRPQAPNREDVFKAFAEVLGFSTLEAAYHWQRVITAVRTSRRLDGRHVSDIYAYMLLQPESVMAHSS IRRKTLQQLFDKARENVATVEIVGPLKESKE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22052; Mature: 21921
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAELREMVEQVLCDAGVSIQSDKTFESALRSYHELVQKRLAQRFPQATVADQVRAVRQS CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH MVELDASLERRLPTLQAMRHWIDLGRSPDTPFEQLRPQAPNREDVFKAFAEVLGFSTLEA HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCHHHHHH AYHWQRVITAVRTSRRLDGRHVSDIYAYMLLQPESVMAHSSIRRKTLQQLFDKARENVAT HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCH VEIVGPLKESKE HHEECCHHCCCC >Mature Secondary Structure SAELREMVEQVLCDAGVSIQSDKTFESALRSYHELVQKRLAQRFPQATVADQVRAVRQS CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH MVELDASLERRLPTLQAMRHWIDLGRSPDTPFEQLRPQAPNREDVFKAFAEVLGFSTLEA HHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCHHHHHH AYHWQRVITAVRTSRRLDGRHVSDIYAYMLLQPESVMAHSSIRRKTLQQLFDKARENVAT HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCH VEIVGPLKESKE HHEECCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA