Click here to switch to the map view.

The map label for this gene is yqaJ [H]

Identifier: 116688228

GI number: 116688228

Start: 224462

End: 225457

Strand: Reverse

Name: yqaJ [H]

Synonym: Bcen2424_0204

Alternate gene names: 116688228

Gene position: 225457-224462 (Counterclockwise)

Preceding gene: 116688229

Following gene: 116688227

Centisome position: 6.47

GC content: 61.95

Gene sequence:

>996_bases
ATGTCGTTGCCTGAAACGGCGGGACGCGGGCGCAAACGTCCAGCCCTGCGTCTCGTTGAAACAAAGGATCTTCCTCGAAC
GGACTGGCTCGAGGTGAGGAAATCCGGGATCGGAGGATCGGACGCGGCAGCAGCCATCGGCCTGAATCCGTACATGAGTG
CGCTGGAACTCTGGTGCGACAAGACAGGACGTGGAGACGGTCTACCCCGCCCCGATCCAGGCGATACGACGTCCCCGACG
TACTGGGGCACGCTTCTTGAGCCGATTGTTTCGGCATCCTACACGAAGCAGACAGGAAACCGTGTGAGACGCGTGAACGC
CGTGCTCCAGCATCCGACGATTCCTTTCATGCTCGCTAACCTCGATCGCGAAGTCATCGGCGTACCCGGTGTGCAGATCC
TCGAGTGCAAGACGGCGGGAGCGTTCGGGGCGCGACTCTGGCGTGAAGGGGTACCGGAATATGTGCAGATCCAGGTCCAG
CACCAGCTCGCGGTCACAGGCAAGCAGGCAGCGGACGTCGCCGTGCTGCTCTGTGGCCAGAAGCTTGAGGTGCATCGCAT
CGAACGCGACGATGAACTGATCGCCCGGCTCATTCCGCTCGAAGCCGCCTTCTGGCGGTATGTCGAAACGGACACGCCAC
CGCCCGCAGACGGATCGGAATCGGCCGACCGCGCGCTGCGCTGCCTCTATCCCGGAACAGGGGGCACGGTCGACTATACG
GACGATCGTAAGCTCTCATCGCTCTTCGCCGATCTCGTCGCACTACGCGCCGACATCGAGCAGCGCGAGACACAGGAAGC
TGTGCTCAAACAGACCCTCATCCAGGCCATGGGAGAAGCCGACCAGGCGATCTTCGAGACGGGATCGGTGTCGTTCAAAC
GCAGTCGCGACAGCGCTGGTGTCGATCTAAAACGACTACTGGCCGAGCACCCCGAAGTCGCCTCGCAATACGCGCTGTCG
AAGCCCGGCTCCCGCAGGTTTCTCATCTCAACCTGA

Upstream 100 bases:

>100_bases
AAGAAGCCATGAAGCTCGTCGCATGAATCCATTTCCATCACGACATACACGCCCGGCCGGGTCTCTTCCCGTCGGGCGTT
TGTGCTTTCAGGAGGTCACC

Downstream 100 bases:

>100_bases
ATTCCCGCTTTGCCCTTCCTGCTTTTCCTTCCCCTGCTTTCATTCCTTTAAGGGAGTATCACGATGATCAAGGGACTTGC
CCTAACGCCGCCCGTCATCG

Product: GP47

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSLPETAGRGRKRPALRLVETKDLPRTDWLEVRKSGIGGSDAAAAIGLNPYMSALELWCDKTGRGDGLPRPDPGDTTSPT
YWGTLLEPIVSASYTKQTGNRVRRVNAVLQHPTIPFMLANLDREVIGVPGVQILECKTAGAFGARLWREGVPEYVQIQVQ
HQLAVTGKQAADVAVLLCGQKLEVHRIERDDELIARLIPLEAAFWRYVETDTPPPADGSESADRALRCLYPGTGGTVDYT
DDRKLSSLFADLVALRADIEQRETQEAVLKQTLIQAMGEADQAIFETGSVSFKRSRDSAGVDLKRLLAEHPEVASQYALS
KPGSRRFLIST

Sequences:

>Translated_331_residues
MSLPETAGRGRKRPALRLVETKDLPRTDWLEVRKSGIGGSDAAAAIGLNPYMSALELWCDKTGRGDGLPRPDPGDTTSPT
YWGTLLEPIVSASYTKQTGNRVRRVNAVLQHPTIPFMLANLDREVIGVPGVQILECKTAGAFGARLWREGVPEYVQIQVQ
HQLAVTGKQAADVAVLLCGQKLEVHRIERDDELIARLIPLEAAFWRYVETDTPPPADGSESADRALRCLYPGTGGTVDYT
DDRKLSSLFADLVALRADIEQRETQEAVLKQTLIQAMGEADQAIFETGSVSFKRSRDSAGVDLKRLLAEHPEVASQYALS
KPGSRRFLIST
>Mature_330_residues
SLPETAGRGRKRPALRLVETKDLPRTDWLEVRKSGIGGSDAAAAIGLNPYMSALELWCDKTGRGDGLPRPDPGDTTSPTY
WGTLLEPIVSASYTKQTGNRVRRVNAVLQHPTIPFMLANLDREVIGVPGVQILECKTAGAFGARLWREGVPEYVQIQVQH
QLAVTGKQAADVAVLLCGQKLEVHRIERDDELIARLIPLEAAFWRYVETDTPPPADGSESADRALRCLYPGTGGTVDYTD
DRKLSSLFADLVALRADIEQRETQEAVLKQTLIQAMGEADQAIFETGSVSFKRSRDSAGVDLKRLLAEHPEVASQYALSK
PGSRRFLIST

Specific function: Unknown

COG id: COG5377

COG function: function code L; Phage-related protein, predicted endonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011604
- InterPro:   IPR017482
- InterPro:   IPR011335
- InterPro:   IPR019080 [H]

Pfam domain/function: PF09588 YqaJ [H]

EC number: NA

Molecular weight: Translated: 36278; Mature: 36146

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPETAGRGRKRPALRLVETKDLPRTDWLEVRKSGIGGSDAAAAIGLNPYMSALELWCD
CCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHC
KTGRGDGLPRPDPGDTTSPTYWGTLLEPIVSASYTKQTGNRVRRVNAVLQHPTIPFMLAN
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LDREVIGVPGVQILECKTAGAFGARLWREGVPEYVQIQVQHQLAVTGKQAADVAVLLCGQ
CCHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEHHEEECCCCHHCEEEEECCC
KLEVHRIERDDELIARLIPLEAAFWRYVETDTPPPADGSESADRALRCLYPGTGGTVDYT
CCEEHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEEEEECCCCCEECCC
DDRKLSSLFADLVALRADIEQRETQEAVLKQTLIQAMGEADQAIFETGSVSFKRSRDSAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEECCCCCCC
VDLKRLLAEHPEVASQYALSKPGSRRFLIST
CHHHHHHHHCHHHHHHHHHCCCCCCEEEEEC
>Mature Secondary Structure 
SLPETAGRGRKRPALRLVETKDLPRTDWLEVRKSGIGGSDAAAAIGLNPYMSALELWCD
CCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHC
KTGRGDGLPRPDPGDTTSPTYWGTLLEPIVSASYTKQTGNRVRRVNAVLQHPTIPFMLAN
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LDREVIGVPGVQILECKTAGAFGARLWREGVPEYVQIQVQHQLAVTGKQAADVAVLLCGQ
CCHHHCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEEHHEEECCCCHHCEEEEECCC
KLEVHRIERDDELIARLIPLEAAFWRYVETDTPPPADGSESADRALRCLYPGTGGTVDYT
CCEEHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHEEEEECCCCCEECCC
DDRKLSSLFADLVALRADIEQRETQEAVLKQTLIQAMGEADQAIFETGSVSFKRSRDSAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEECCCCCCC
VDLKRLLAEHPEVASQYALSKPGSRRFLIST
CHHHHHHHHCHHHHHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895 [H]