| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is 116688167
Identifier: 116688167
GI number: 116688167
Start: 155546
End: 156688
Strand: Reverse
Name: 116688167
Synonym: Bcen2424_0143
Alternate gene names: NA
Gene position: 156688-155546 (Counterclockwise)
Preceding gene: 116688168
Following gene: 116688166
Centisome position: 4.5
GC content: 69.99
Gene sequence:
>1143_bases ATGGTGCGTCCGATGTTTCCGGGCCATGGTGCAACAGCGCGGCGGCCGCGCCCCCGCGCAGGCCGCTACGTGCCGATGCT CGTCGCAGCGCTATCGCTGGCCGCCGCCGGCCTCGGCGTGTCCGGCAGTGCGCGCGCGGCGATGAATTTCTGCGCGGCTC CGGCGCTGCAGGCGAGCGAGACGACGCAGGCCGAGCCGGGCGTGCAGGCGCTGATCCGCAGCGTCGACGCGCGCATCGGT GAGCAGCCGAAGGCGATGGCGCGCGTGCACACCGAGGGCACGCTGCCGCACGAAGGCATCTATGACCAGAGTGCGGCCGC GCTCAAGGACATGGACCTGATGCGCGATGCGGCGCTCGCGTGGCGCGTGACGAACGCGCCGCGCTACCTGCAGCTCGTCG ACCGCTTCCTGTCCGCGTGGGTCTCGACCTACCAGCCGAGCTTCAACCCGATCGACGAGACGCGCTTCGAGAGCCTGATC GTCGCGTACGACATGACCGCGAGCGCGCTGCCGGTGAAAACGCGCAACGCGACGGCCGCGTTCATCGCGAAGCTCGGCGC CGGCTATGTCGCGCAGGTCGACGCGCAGAAGCGCCCGCTCACCGGCACCTGGCGCAACAACTGGCAGAGCCACCGGATCA AGCTGATCGCGCTGTCCGCGTTCACGCTCGGCGACCGCAAGATGATGAACGCCGCGCAGCGGCTGTTCGTCGAGCATCTC GCCGACAACATCGGCCCGGACGGCAAGACCTGGGATTTCGAGGAACGCGATGCGCTGCATTACGCGGTCTACGATCTGCA GCCGCTGGTGACGGCCGCGCTCGCCGCGCGCCGCTTCAACCGCAACTGGCTGCGCGAGCGCGGCGCGAACGGCGCGACGC TCGCGGCCGCGCTCGACTGGCTCGTGCCGTATGCGCTCGGCGAGAAGACGCACGAGGAATTCGTGAATTCGCCGGTGCCG TTCGACGCGAAGCGCCGCGAGGCCGGCTTGCCCGGCTACACGGGGCAGTGGGACCCGAAAAACGCCACCGAACTCTTTCA TCTGGCCGCGCGGCTCGACGGGCGTTATGCCCGCGTCGCGCAGCAGCTTTCCCTAACGCCGCCCGCATGGCTCGCCGCGT GCCTGCCATTGCAGGCGCGCTAG
Upstream 100 bases:
>100_bases TTGCGTGCGGTTTTTACGTTCGCCGCCCGGCCAACCGTTTCACGCTCGCCCGCCAATCCGGCTAACATCACACGCGATCC AGCCAATGAAGGAGTTCCGC
Downstream 100 bases:
>100_bases CATCATTCTTATCGCAAGGCAGGTATCGAAATGGCAGTCAGCGTGTTTGACCTTTTCAAGATCGGCATCGGTCCGTCCAG TTCGCACACGGTCGGACCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 380; Mature: 380
Protein sequence:
>380_residues MVRPMFPGHGATARRPRPRAGRYVPMLVAALSLAAAGLGVSGSARAAMNFCAAPALQASETTQAEPGVQALIRSVDARIG EQPKAMARVHTEGTLPHEGIYDQSAAALKDMDLMRDAALAWRVTNAPRYLQLVDRFLSAWVSTYQPSFNPIDETRFESLI VAYDMTASALPVKTRNATAAFIAKLGAGYVAQVDAQKRPLTGTWRNNWQSHRIKLIALSAFTLGDRKMMNAAQRLFVEHL ADNIGPDGKTWDFEERDALHYAVYDLQPLVTAALAARRFNRNWLRERGANGATLAAALDWLVPYALGEKTHEEFVNSPVP FDAKRREAGLPGYTGQWDPKNATELFHLAARLDGRYARVAQQLSLTPPAWLAACLPLQAR
Sequences:
>Translated_380_residues MVRPMFPGHGATARRPRPRAGRYVPMLVAALSLAAAGLGVSGSARAAMNFCAAPALQASETTQAEPGVQALIRSVDARIG EQPKAMARVHTEGTLPHEGIYDQSAAALKDMDLMRDAALAWRVTNAPRYLQLVDRFLSAWVSTYQPSFNPIDETRFESLI VAYDMTASALPVKTRNATAAFIAKLGAGYVAQVDAQKRPLTGTWRNNWQSHRIKLIALSAFTLGDRKMMNAAQRLFVEHL ADNIGPDGKTWDFEERDALHYAVYDLQPLVTAALAARRFNRNWLRERGANGATLAAALDWLVPYALGEKTHEEFVNSPVP FDAKRREAGLPGYTGQWDPKNATELFHLAARLDGRYARVAQQLSLTPPAWLAACLPLQAR >Mature_380_residues MVRPMFPGHGATARRPRPRAGRYVPMLVAALSLAAAGLGVSGSARAAMNFCAAPALQASETTQAEPGVQALIRSVDARIG EQPKAMARVHTEGTLPHEGIYDQSAAALKDMDLMRDAALAWRVTNAPRYLQLVDRFLSAWVSTYQPSFNPIDETRFESLI VAYDMTASALPVKTRNATAAFIAKLGAGYVAQVDAQKRPLTGTWRNNWQSHRIKLIALSAFTLGDRKMMNAAQRLFVEHL ADNIGPDGKTWDFEERDALHYAVYDLQPLVTAALAARRFNRNWLRERGANGATLAAALDWLVPYALGEKTHEEFVNSPVP FDAKRREAGLPGYTGQWDPKNATELFHLAARLDGRYARVAQQLSLTPPAWLAACLPLQAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41758; Mature: 41758
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRPMFPGHGATARRPRPRAGRYVPMLVAALSLAAAGLGVSGSARAAMNFCAAPALQASE CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC TTQAEPGVQALIRSVDARIGEQPKAMARVHTEGTLPHEGIYDQSAAALKDMDLMRDAALA CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH WRVTNAPRYLQLVDRFLSAWVSTYQPSFNPIDETRFESLIVAYDMTASALPVKTRNATAA EEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEECCCCCCCCCCCCCHHHH FIAKLGAGYVAQVDAQKRPLTGTWRNNWQSHRIKLIALSAFTLGDRKMMNAAQRLFVEHL HHHHHCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHH ADNIGPDGKTWDFEERDALHYAVYDLQPLVTAALAARRFNRNWLRERGANGATLAAALDW HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH LVPYALGEKTHEEFVNSPVPFDAKRREAGLPGYTGQWDPKNATELFHLAARLDGRYARVA HHHHHHCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHH QQLSLTPPAWLAACLPLQAR HHHCCCCHHHHHHHCCCCCC >Mature Secondary Structure MVRPMFPGHGATARRPRPRAGRYVPMLVAALSLAAAGLGVSGSARAAMNFCAAPALQASE CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCC TTQAEPGVQALIRSVDARIGEQPKAMARVHTEGTLPHEGIYDQSAAALKDMDLMRDAALA CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH WRVTNAPRYLQLVDRFLSAWVSTYQPSFNPIDETRFESLIVAYDMTASALPVKTRNATAA EEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEEECCCCCCCCCCCCCHHHH FIAKLGAGYVAQVDAQKRPLTGTWRNNWQSHRIKLIALSAFTLGDRKMMNAAQRLFVEHL HHHHHCCCCEEEECCCCCCCCCHHHCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHH ADNIGPDGKTWDFEERDALHYAVYDLQPLVTAALAARRFNRNWLRERGANGATLAAALDW HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH LVPYALGEKTHEEFVNSPVPFDAKRREAGLPGYTGQWDPKNATELFHLAARLDGRYARVA HHHHHHCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHH QQLSLTPPAWLAACLPLQAR HHHCCCCHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA