Click here to switch to the map view.

The map label for this gene is aidB [H]

Identifier: 116688141

GI number: 116688141

Start: 125495

End: 127147

Strand: Reverse

Name: aidB [H]

Synonym: Bcen2424_0117

Alternate gene names: 116688141

Gene position: 127147-125495 (Counterclockwise)

Preceding gene: 116688146

Following gene: 116688140

Centisome position: 3.65

GC content: 71.51

Gene sequence:

>1653_bases
ATGACCGACTCGACTCACGCCGTCACGAACCAGTTCGACGAACTCGTCGACTATAACCTCTTCGCGACGGATCTCGCGCT
GCGCGACGCGCTCGCCCGGGCCGGCGCCGACTGGGCCGTGCCACAGCTCGACGCGTACGGCGCGCGGCTCGGCAGCGCCG
ACACCGCGCAACTCGCCGACGAAGCGAACCAGCACACGCCGGAACTGCACGCGTTCGACCGGCGCGGCCGGCGCATCGAC
CGCGTCGACTTCCATCCCGCCTGGCACGCGCTGCTCGGCCAGTACCGCCACGAAGGCTTCGTGTCGCTCGCGTTCCGCGA
CCCGCGCCGCGGCCGCTGGGCCGCGACGGCCGCCGGCTTCTACCTGCATGGCCAGATCGAGGCCGGCACGCTGTGCCCGG
CGACGATGACGCAGGCCGCGATCCCCGTGCTGCAGAAGGAGCCGGCACTGTGGGACCTGCTGCGCGACAAGCTCTACAGC
GACGACTACGATCCGCGCGACGTGCCGGTCGCCGACAAGCGCGCGATCTGGTTCGGCATGGGCATGACCGAGAAACAGGG
CGGCTCCGACGTGCGTGCGAACACGACGCTCGCCACGCCGGTCGGCGCGGGCGGGCGCGGCGGCGAATACCGGCTGCGCG
GCCACAAGTGGTTCTTCTCCGCGCCGATGTGCGACGCGCACCTGGTCGTCGCGCGCACCGAGGCCGGCAGCCCGTCGTGC
TTCTACGTGCCGCGCTGGCGGCCGGACGGCACGAAGAACGCGGTCGAGATCCAGCGGCTGAAGAACAAGGTCGGCAACCG
CAGCAACTCGAGCAGCGAGATCGAGCTGAACGACGCGTGGGGCATCATGCTCGGCGACGAAGGCCGCGGCATTCCCACCA
TCATCGAGATGGCTACCTACACGCGGCTGAACTGCGTGCTCGGCAGTGCGGCGATGCTGCGCCAGGGCGTCGTGCAGGCG
ATCGCGTACACGCGCCAGCGCCATGCGTTCGGCCGTGCGCTCGCCGAGCAGCCGCTGATGCGCACCGTGCTCGCCGATCT
CGCGCTGGAGAGCGAAGCGGCGCTGTCGCTCGCGATGCGGCTCGCCGATGCGTTCGAACGCGACGACTCGCCGCGCGAAC
GCGCATGGAAACGGATCGTCACGCCCGCCGCGAAATTCTGGGTCTGCAAGCGCGCGGTCGAGCTGACCGGCGAGGTGATG
GAAGTGTTCGGCGGCAACGGTTACGTCGACGACGGCCCGATCGCGCGCCTGTTCCGCGAGGCGCCCGTCAACTCGATCTG
GGAAGGCTCGGGCAACGTGATGTGCCTCGACGTGCTGCGTGCCGTATCGCGCGAGCCCGACGCGGCCGCCGCGCTATTCG
ACGAACTGGCCGACCTCGGCGCGGGCGAACCGCGCATTCGTGCCGCGCTCGACGGATTGCGCGCGATGCTCGCCGCCCCG
GCCGACACGCTCGAAGCGTCGGGCCGCGTGTTCGCGCAACGGCTCGCGGTCGTCGCGCAGGCGTGCCTGCTGCGCCGCGA
TGCGCCGGCGGCCGTCTCCGACGCGTTCGTCGCGACGCGGCTCGCCGCGCCCGACTGGGGCCGCATCGCGGGCGGCTTCG
ATCCGCACGCGATCGACGTCGCCGCGCTGCTGCAGCGCGCGTACCCGGCCTGA

Upstream 100 bases:

>100_bases
TTTTACCGGAAGCCGGCATCCGCGGCAAAGCGCCCTCCGCGCGGCATGATGCCGGCTGACCGCGAAGCATGAGACCGGAG
ACAAACCGGAGACAACCGCG

Downstream 100 bases:

>100_bases
CGCCGGCCCGTTCACCCGATTTCGCGTTCGTTCGCCCGCCCGGAGCCTCGATGAACCTCGTCGCCGCCCTCGACCGCGCC
GCCCGTGCGACGCCCGACAA

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 549

Protein sequence:

>550_residues
MTDSTHAVTNQFDELVDYNLFATDLALRDALARAGADWAVPQLDAYGARLGSADTAQLADEANQHTPELHAFDRRGRRID
RVDFHPAWHALLGQYRHEGFVSLAFRDPRRGRWAATAAGFYLHGQIEAGTLCPATMTQAAIPVLQKEPALWDLLRDKLYS
DDYDPRDVPVADKRAIWFGMGMTEKQGGSDVRANTTLATPVGAGGRGGEYRLRGHKWFFSAPMCDAHLVVARTEAGSPSC
FYVPRWRPDGTKNAVEIQRLKNKVGNRSNSSSEIELNDAWGIMLGDEGRGIPTIIEMATYTRLNCVLGSAAMLRQGVVQA
IAYTRQRHAFGRALAEQPLMRTVLADLALESEAALSLAMRLADAFERDDSPRERAWKRIVTPAAKFWVCKRAVELTGEVM
EVFGGNGYVDDGPIARLFREAPVNSIWEGSGNVMCLDVLRAVSREPDAAAALFDELADLGAGEPRIRAALDGLRAMLAAP
ADTLEASGRVFAQRLAVVAQACLLRRDAPAAVSDAFVATRLAAPDWGRIAGGFDPHAIDVAALLQRAYPA

Sequences:

>Translated_550_residues
MTDSTHAVTNQFDELVDYNLFATDLALRDALARAGADWAVPQLDAYGARLGSADTAQLADEANQHTPELHAFDRRGRRID
RVDFHPAWHALLGQYRHEGFVSLAFRDPRRGRWAATAAGFYLHGQIEAGTLCPATMTQAAIPVLQKEPALWDLLRDKLYS
DDYDPRDVPVADKRAIWFGMGMTEKQGGSDVRANTTLATPVGAGGRGGEYRLRGHKWFFSAPMCDAHLVVARTEAGSPSC
FYVPRWRPDGTKNAVEIQRLKNKVGNRSNSSSEIELNDAWGIMLGDEGRGIPTIIEMATYTRLNCVLGSAAMLRQGVVQA
IAYTRQRHAFGRALAEQPLMRTVLADLALESEAALSLAMRLADAFERDDSPRERAWKRIVTPAAKFWVCKRAVELTGEVM
EVFGGNGYVDDGPIARLFREAPVNSIWEGSGNVMCLDVLRAVSREPDAAAALFDELADLGAGEPRIRAALDGLRAMLAAP
ADTLEASGRVFAQRLAVVAQACLLRRDAPAAVSDAFVATRLAAPDWGRIAGGFDPHAIDVAALLQRAYPA
>Mature_549_residues
TDSTHAVTNQFDELVDYNLFATDLALRDALARAGADWAVPQLDAYGARLGSADTAQLADEANQHTPELHAFDRRGRRIDR
VDFHPAWHALLGQYRHEGFVSLAFRDPRRGRWAATAAGFYLHGQIEAGTLCPATMTQAAIPVLQKEPALWDLLRDKLYSD
DYDPRDVPVADKRAIWFGMGMTEKQGGSDVRANTTLATPVGAGGRGGEYRLRGHKWFFSAPMCDAHLVVARTEAGSPSCF
YVPRWRPDGTKNAVEIQRLKNKVGNRSNSSSEIELNDAWGIMLGDEGRGIPTIIEMATYTRLNCVLGSAAMLRQGVVQAI
AYTRQRHAFGRALAEQPLMRTVLADLALESEAALSLAMRLADAFERDDSPRERAWKRIVTPAAKFWVCKRAVELTGEVME
VFGGNGYVDDGPIARLFREAPVNSIWEGSGNVMCLDVLRAVSREPDAAAALFDELADLGAGEPRIRAALDGLRAMLAAPA
DTLEASGRVFAQRLAVVAQACLLRRDAPAAVSDAFVATRLAAPDWGRIAGGFDPHAIDVAALLQRAYPA

Specific function: May help to prevent alkylation damage by protecting DNA and destroying alkylating agents [H]

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI226958412, Length=269, Percent_Identity=25.2788104089219, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI226958414, Length=269, Percent_Identity=25.2788104089219, Blast_Score=80, Evalue=6e-15,
Organism=Homo sapiens, GI4557231, Length=266, Percent_Identity=24.812030075188, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI187960098, Length=266, Percent_Identity=24.812030075188, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI7656849, Length=276, Percent_Identity=26.8115942028986, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI4557233, Length=267, Percent_Identity=25.8426966292135, Blast_Score=68, Evalue=3e-11,
Organism=Homo sapiens, GI4501859, Length=276, Percent_Identity=26.4492753623188, Blast_Score=66, Evalue=7e-11,
Organism=Escherichia coli, GI87082384, Length=523, Percent_Identity=45.3154875717017, Blast_Score=427, Evalue=1e-121,
Organism=Escherichia coli, GI1786223, Length=274, Percent_Identity=25.5474452554745, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87081958, Length=261, Percent_Identity=24.1379310344828, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI86563383, Length=490, Percent_Identity=29.1836734693878, Blast_Score=174, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI86563381, Length=490, Percent_Identity=29.1836734693878, Blast_Score=173, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI17538396, Length=274, Percent_Identity=25.5474452554745, Blast_Score=93, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17508101, Length=301, Percent_Identity=24.5847176079734, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17569725, Length=265, Percent_Identity=23.7735849056604, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17533517, Length=271, Percent_Identity=24.7232472324723, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24660351, Length=274, Percent_Identity=27.7372262773723, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21355753, Length=263, Percent_Identity=23.9543726235741, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21356377, Length=276, Percent_Identity=25.7246376811594, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24646207, Length=289, Percent_Identity=24.9134948096886, Blast_Score=70, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M [H]

EC number: NA

Molecular weight: Translated: 60010; Mature: 59878

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS00072 ACYL_COA_DH_1 ; PS00073 ACYL_COA_DH_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSTHAVTNQFDELVDYNLFATDLALRDALARAGADWAVPQLDAYGARLGSADTAQLAD
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHH
EANQHTPELHAFDRRGRRIDRVDFHPAWHALLGQYRHEGFVSLAFRDPRRGRWAATAAGF
HHHCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEECCE
YLHGQIEAGTLCPATMTQAAIPVLQKEPALWDLLRDKLYSDDYDPRDVPVADKRAIWFGM
EEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC
GMTEKQGGSDVRANTTLATPVGAGGRGGEYRLRGHKWFFSAPMCDAHLVVARTEAGSPSC
CCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCEEEEECCCCCCEEEEEEECCCCCCE
FYVPRWRPDGTKNAVEIQRLKNKVGNRSNSSSEIELNDAWGIMLGDEGRGIPTIIEMATY
EEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHH
TRLNCVLGSAAMLRQGVVQAIAYTRQRHAFGRALAEQPLMRTVLADLALESEAALSLAMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LADAFERDDSPRERAWKRIVTPAAKFWVCKRAVELTGEVMEVFGGNGYVDDGPIARLFRE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
APVNSIWEGSGNVMCLDVLRAVSREPDAAAALFDELADLGAGEPRIRAALDGLRAMLAAP
CCCCHHHCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
ADTLEASGRVFAQRLAVVAQACLLRRDAPAAVSDAFVATRLAAPDWGRIAGGFDPHAIDV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
AALLQRAYPA
HHHHHHHCCC
>Mature Secondary Structure 
TDSTHAVTNQFDELVDYNLFATDLALRDALARAGADWAVPQLDAYGARLGSADTAQLAD
CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHHHHH
EANQHTPELHAFDRRGRRIDRVDFHPAWHALLGQYRHEGFVSLAFRDPRRGRWAATAAGF
HHHCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEECCE
YLHGQIEAGTLCPATMTQAAIPVLQKEPALWDLLRDKLYSDDYDPRDVPVADKRAIWFGM
EEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEC
GMTEKQGGSDVRANTTLATPVGAGGRGGEYRLRGHKWFFSAPMCDAHLVVARTEAGSPSC
CCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCEEEEECCCCCCEEEEEEECCCCCCE
FYVPRWRPDGTKNAVEIQRLKNKVGNRSNSSSEIELNDAWGIMLGDEGRGIPTIIEMATY
EEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHH
TRLNCVLGSAAMLRQGVVQAIAYTRQRHAFGRALAEQPLMRTVLADLALESEAALSLAMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LADAFERDDSPRERAWKRIVTPAAKFWVCKRAVELTGEVMEVFGGNGYVDDGPIARLFRE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
APVNSIWEGSGNVMCLDVLRAVSREPDAAAALFDELADLGAGEPRIRAALDGLRAMLAAP
CCCCHHHCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
ADTLEASGRVFAQRLAVVAQACLLRRDAPAAVSDAFVATRLAAPDWGRIAGGFDPHAIDV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
AALLQRAYPA
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961409; 7610040; 9278503 [H]