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The map label for this gene is atpD1 [H]

Identifier: 116688130

GI number: 116688130

Start: 108126

End: 109520

Strand: Direct

Name: atpD1 [H]

Synonym: Bcen2424_0106

Alternate gene names: 116688130

Gene position: 108126-109520 (Clockwise)

Preceding gene: 116688129

Following gene: 116688131

Centisome position: 3.1

GC content: 61.72

Gene sequence:

>1395_bases
ATGAGTACTGCTGCTTTGGTAGAAGGCAAGATCGTACAGTGCATCGGCGCCGTTATCGACGTGGAATTCCCGCGCGACAG
CATGCCGAAGATCTACGACGCGCTCATTCTCGATGGCTCGGAACTGACGCTCGAAGTCCAGCAGCAGCTGGGCGACGGCG
TGGTCCGTACCATTTGTCTGGGTGCATCCGACGGCCTGCGCCGCGGCCTGACCGTGAAGAACACGGCGAAGCCGATCTCG
GTGCCGGTCGGCAAGCCGACCCTCGGCCGAATCATGGACGTGCTCGGCCGTCCGATCGACGAAGCCGGCCCGATCGAGAG
CGACGTGACGCGTTCGATCCACCAGAAGGCACCGGCGTTCGACGAACTGTCGCCGTCGACCGAACTGCTCGAAACGGGTA
TCAAGGTCATCGACTTGATCTGCCCGTTCGCAAAGGGCGGCAAGGTTGGCCTGTTCGGTGGTGCAGGCGTGGGCAAGACC
GTCAACATGATGGAGCTCATCAACAACATCGCGAAGGAACACGGCGGTTACTCCGTGTTCGCGGGCGTGGGCGAGCGTAC
CCGTGAAGGGAACGACTTCTACCACGAAATGAAGGACTCGAACGTTCTCGACAAGGTCGCGCTGGTGTACGGCCAGATGA
ACGAGCCGCCGGGCAACCGTCTGCGCGTCGCGCTGACCGGCCTGACGATGGCCGAGCACTTCCGTGACGAAGGCCTCGAC
GTGCTGTTCTTCGTCGACAACATCTACCGTTTCACGCTGGCCGGTACCGAAGTGTCGGCACTGCTCGGCCGTATGCCGTC
GGCAGTGGGCTATCAGCCGACGCTGGCTGAAGAAATGGGCAAGCTGCAAGAGCGCATCACGTCGACCAAGAAGGGCTCGA
TTACGTCGGTTCAGGCCGTGTACGTCCCTGCGGACGACTTGACCGACCCGTCGCCGGCAACCACCTTCGGCCACCTGGAC
GCAACCGTCGTTCTGTCGCGTGACATCGCTTCGCTGGGTATCTACCCGGCGGTCGACCCGCTCGACTCGACGTCGCGCCA
GATCGACCCGAACGTGATCGGTGAAGAGCACTACTCGATCACCCGTCGCGTTCAGCAGACGCTGCAGCGCTACAAGGAAC
TGCGCGACATCATCGCGATTCTGGGCATGGACGAACTGTCGCCGGAAGACAAGCTGTCGGTCGCACGTGCGCGTAAGATC
CAGCGTTTCCTGTCGCAGCCGTTCCACGTCGCTGAAGTGTTCACGGGCTCGCCGGGCAAGTACGTGCCGCTGAAGGAAAC
GATCCGTGGCTTCAAGATGATCGTCGACGGCGAGTGCGACCACCTGCCGGAACAGGCGTTCTACATGGTCGGCACGATCG
ACGAAGCCTTCGAAAAGGCCAAGAAGATCCAGTAA

Upstream 100 bases:

>100_bases
GTCGGAGATCGTCGGCGGCGCAGCCGCTGTTTAAGCGCGCGCCCGGGACGACAACTGCGCCTTTGCGCGAGTAAAGAATC
AGGTATTTAAAGGAAAAGCG

Downstream 100 bases:

>100_bases
GGGCTGAGTGAGTCGCAAGCCGGCGAGCGCCGGCCGGAACGATGAGTCAGTGATGACTTGTATTCCGGCCGCCTGCGCCG
GCCGCAATACGCTCAACCCG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1 [H]

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MSTAALVEGKIVQCIGAVIDVEFPRDSMPKIYDALILDGSELTLEVQQQLGDGVVRTICLGASDGLRRGLTVKNTAKPIS
VPVGKPTLGRIMDVLGRPIDEAGPIESDVTRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKT
VNMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLD
VLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAVYVPADDLTDPSPATTFGHLD
ATVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSITRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKI
QRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ

Sequences:

>Translated_464_residues
MSTAALVEGKIVQCIGAVIDVEFPRDSMPKIYDALILDGSELTLEVQQQLGDGVVRTICLGASDGLRRGLTVKNTAKPIS
VPVGKPTLGRIMDVLGRPIDEAGPIESDVTRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKT
VNMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLD
VLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAVYVPADDLTDPSPATTFGHLD
ATVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSITRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKI
QRFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ
>Mature_463_residues
STAALVEGKIVQCIGAVIDVEFPRDSMPKIYDALILDGSELTLEVQQQLGDGVVRTICLGASDGLRRGLTVKNTAKPISV
PVGKPTLGRIMDVLGRPIDEAGPIESDVTRSIHQKAPAFDELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTV
NMMELINNIAKEHGGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLDV
LFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAVYVPADDLTDPSPATTFGHLDA
TVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSITRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQ
RFLSQPFHVAEVFTGSPGKYVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=469, Percent_Identity=69.0831556503198, Blast_Score=646, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=321, Percent_Identity=27.4143302180685, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI50345984, Length=321, Percent_Identity=26.1682242990654, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI4757810, Length=321, Percent_Identity=26.1682242990654, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI19913428, Length=421, Percent_Identity=25.1781472684086, Blast_Score=103, Evalue=5e-22,
Organism=Homo sapiens, GI19913426, Length=404, Percent_Identity=24.5049504950495, Blast_Score=99, Evalue=1e-20,
Organism=Escherichia coli, GI1790170, Length=460, Percent_Identity=80.6521739130435, Blast_Score=753, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=305, Percent_Identity=31.4754098360656, Blast_Score=139, Evalue=4e-34,
Organism=Escherichia coli, GI1790172, Length=386, Percent_Identity=25.1295336787565, Blast_Score=118, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI25144756, Length=471, Percent_Identity=68.3651804670913, Blast_Score=641, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=319, Percent_Identity=29.153605015674, Blast_Score=118, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17510931, Length=347, Percent_Identity=25.9365994236311, Blast_Score=108, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71988080, Length=303, Percent_Identity=26.0726072607261, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI71988063, Length=303, Percent_Identity=26.0726072607261, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17570191, Length=405, Percent_Identity=23.9506172839506, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71988074, Length=264, Percent_Identity=24.6212121212121, Blast_Score=84, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6322581, Length=466, Percent_Identity=65.6652360515021, Blast_Score=617, Evalue=1e-177,
Organism=Saccharomyces cerevisiae, GI6319603, Length=407, Percent_Identity=25.7985257985258, Blast_Score=114, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6319370, Length=419, Percent_Identity=24.582338902148, Blast_Score=110, Evalue=6e-25,
Organism=Saccharomyces cerevisiae, GI6320016, Length=230, Percent_Identity=26.9565217391304, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24638766, Length=464, Percent_Identity=68.9655172413793, Blast_Score=641, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=466, Percent_Identity=63.7339055793991, Blast_Score=591, Evalue=1e-169,
Organism=Drosophila melanogaster, GI24583988, Length=356, Percent_Identity=26.685393258427, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24583986, Length=356, Percent_Identity=26.685393258427, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24583984, Length=356, Percent_Identity=26.685393258427, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24583992, Length=326, Percent_Identity=27.6073619631902, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI20129479, Length=319, Percent_Identity=28.2131661442006, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI281361666, Length=413, Percent_Identity=24.9394673123487, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24646341, Length=413, Percent_Identity=24.9394673123487, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI17136796, Length=413, Percent_Identity=24.9394673123487, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24658560, Length=303, Percent_Identity=25.0825082508251, Blast_Score=99, Evalue=8e-21,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=50, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50584; Mature: 50452

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAALVEGKIVQCIGAVIDVEFPRDSMPKIYDALILDGSELTLEVQQQLGDGVVRTICL
CCCCHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHC
GASDGLRRGLTVKNTAKPISVPVGKPTLGRIMDVLGRPIDEAGPIESDVTRSIHQKAPAF
CCCHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
DELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEHGGYSVF
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
AGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLD
ECCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCE
VLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAV
EEEEEHHHEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
YVPADDLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSI
EECCCCCCCCCCCCEECCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
TRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQRFLSQPFHVAEVFTGSPGK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHEECCCCC
YVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ
CCCHHHHHHHHEEEECCCCCCCCHHHHEEHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STAALVEGKIVQCIGAVIDVEFPRDSMPKIYDALILDGSELTLEVQQQLGDGVVRTICL
CCCHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHC
GASDGLRRGLTVKNTAKPISVPVGKPTLGRIMDVLGRPIDEAGPIESDVTRSIHQKAPAF
CCCHHHHCCCEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC
DELSPSTELLETGIKVIDLICPFAKGGKVGLFGGAGVGKTVNMMELINNIAKEHGGYSVF
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
AGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEHFRDEGLD
ECCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHHHCCCE
VLFFVDNIYRFTLAGTEVSALLGRMPSAVGYQPTLAEEMGKLQERITSTKKGSITSVQAV
EEEEEHHHEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
YVPADDLTDPSPATTFGHLDATVVLSRDIASLGIYPAVDPLDSTSRQIDPNVIGEEHYSI
EECCCCCCCCCCCCEECCCCEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
TRRVQQTLQRYKELRDIIAILGMDELSPEDKLSVARARKIQRFLSQPFHVAEVFTGSPGK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEHHEECCCCC
YVPLKETIRGFKMIVDGECDHLPEQAFYMVGTIDEAFEKAKKIQ
CCCHHHHHHHHEEEECCCCCCCCHHHHEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA