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The map label for this gene is fliN [H]

Identifier: 116688063

GI number: 116688063

Start: 42596

End: 43084

Strand: Reverse

Name: fliN [H]

Synonym: Bcen2424_0039

Alternate gene names: 116688063

Gene position: 43084-42596 (Counterclockwise)

Preceding gene: 116688064

Following gene: 116688062

Centisome position: 1.24

GC content: 67.69

Gene sequence:

>489_bases
ATGAGTGAGCTGAACCAGACGCCCGACGACGACATCCAGGCGATGGCCGATGCGGCCCTCGCGGCGTCGGCTGCCGACGC
GAAGGCGCCGGCCGCGGCCGAGGAAGATCCGGGCATGGACGACTGGGCGGCCGCGCTCGCCGAGCAGAACGAGCAACCGG
TGCAGGCGGGCGCGACGGGCGCCGGCGTGTTCCAGCCGCTGTCGAAGGCCGCGGCGAGCTCGACGCACAACGACATCGAG
ATGATCCTCGACATCCCGGTCAAGATGACCGTGGAGCTCGGCCGCACGAAGATCGCGATCCGCAACCTGCTGCAACTCGC
GCAAGGGTCGGTCGTCGAGCTCGACGGCATGGCCGGCGAGCCGATGGACGTGCTCGTGAACGGCTGCCTGATCGCGCAGG
GCGAAGTCGTGGTGGTCAACGACAAGTTCGGTATTCGCCTCACCGACATCATCACGCCGGCCGAACGCATCCGGAAGCTG
AATCGATGA

Upstream 100 bases:

>100_bases
GTGCCGGTGATGGAGTGCGGCTACGGAATTTTCAATGGTCAATATGCGTTGCGCGTGCAGAAGATGATCGGCGCGAGCGA
TTCGATGAAGGAAGGTGGAT

Downstream 100 bases:

>100_bases
ACGTCGTGATGTCCGGCCGGCGCGCGTGCCGCGCGATTGCGGCGGCGGCACTGGCCGCCGCCGCGTCGCTCGTGTGCGCA
CCGGCCGGCGCCGCCGACAT

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MSELNQTPDDDIQAMADAALAASAADAKAPAAAEEDPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAASSTHNDIE
MILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRKL
NR

Sequences:

>Translated_162_residues
MSELNQTPDDDIQAMADAALAASAADAKAPAAAEEDPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAASSTHNDIE
MILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRKL
NR
>Mature_161_residues
SELNQTPDDDIQAMADAALAASAADAKAPAAAEEDPGMDDWAAALAEQNEQPVQAGATGAGVFQPLSKAAASSTHNDIEM
ILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRKLN
R

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=139, Percent_Identity=56.1151079136691, Blast_Score=154, Evalue=3e-39,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 16990; Mature: 16859

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELNQTPDDDIQAMADAALAASAADAKAPAAAEEDPGMDDWAAALAEQNEQPVQAGATG
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
AGVFQPLSKAAASSTHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGE
CHHHHHHHHHHHCCCCCCEEEEEECCCEEEEHHCHHHHHHHHHHHHHCCCEEEECCCCCC
PMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRKLNR
CHHHHHHCEEEECCCEEEEECCCCEEEHHHCCCHHHHHHCCC
>Mature Secondary Structure 
SELNQTPDDDIQAMADAALAASAADAKAPAAAEEDPGMDDWAAALAEQNEQPVQAGATG
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
AGVFQPLSKAAASSTHNDIEMILDIPVKMTVELGRTKIAIRNLLQLAQGSVVELDGMAGE
CHHHHHHHHHHHCCCCCCEEEEEECCCEEEEHHCHHHHHHHHHHHHHCCCEEEECCCCCC
PMDVLVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRKLNR
CHHHHHHCEEEECCCEEEEECCCCEEEHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]