| Definition | Burkholderia cenocepacia HI2424 chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008542 |
| Length | 3,483,902 |
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The map label for this gene is mod [H]
Identifier: 116688052
GI number: 116688052
Start: 31162
End: 33180
Strand: Reverse
Name: mod [H]
Synonym: Bcen2424_0028
Alternate gene names: 116688052
Gene position: 33180-31162 (Counterclockwise)
Preceding gene: 116688053
Following gene: 116688051
Centisome position: 0.95
GC content: 68.05
Gene sequence:
>2019_bases ATGGAAAAGACGATGCAGAAACTCGATGCGGCCAGCCCGCAGGCGATGTCGACGGATTTCACCGCCGACAACGTCGCGCG CCTGAAGGCGCTGTTCCCCGAACTCGTGACCGAAGGCCCGGACGGCGCGTCGGTCGACGTCGACGTGCTGAAGGCGCTGG TCGGCGAGCGCACGGTCGGCGACGCCGACGAGCGCTACGGCTTCCACTGGCACGGCAAGCGCGCCGCGCGCCAGGCCGCG CTCACGCCGTCGACGGGCACGCTGCGACCCTGCCCCGACGACAGCGTCGCGTGGGACGACACGCGCCATCTCGTGATCGA GGGCGACAACCTCGACGTGATGAAGCTGCTGCACAAGAGCTACGCCGGCAAGGTGAAGCTCGTCTACATCGACCCGCCGT ACAACACCGGCAGCGATTTCGTCTATCCGGACGACTTCAGCGACAGCATCCGCCACTACCTGGCGATGACGGGCCAGACC GAAGCCGGCGTGAAGCGCAGCACCAACACCGAGGCGAACGGCCGGTTCCACACCGACTGGCTGAACATGATGTATCCGCG CCTGAAGCTCGCGCACGCGCTGCTGTCCGACGAAGGGCTGATCGCGGTGCACATCGACGAGCACGAAGTGCACGCGCTCG TGCTGATGCTGCGCGAGATCTTCGGCGAGGAAAACGAGCTCGGCGTGGCCGTGTGGGACAAGCGCAACCCGAAGGGCGAC GCGCGCGGCGTCGCGTACCAGCACGAATCGCTGGTGCTGTTCGCGCGCAACGCCGAGACGCTGCTCGAACGGGCGCCGCT CAAGCGCCCGAAGCGCAACGCGCAGCGCATGCTCGATGCCGCGCACGACGCGGTGTACCGCAGCGGCAACCCGAAGGACG CGCAGAAGGCGTACCGCGCGTGGATGAAGGCGCAGACCAACCTGTCCGGCGGCGAGGTGATGTACGACCGGCTGTCGCCG GAAGGCCGCGTGTACCGCCTCGTGTCGATGGCGTGGCCGAACAAGAAGAAGGCGCCGGACGAATATTTCACGCCGCTGAT CCACCCGGTCACCGGCAAGCCGTGCGCGATGCCGGCGCGCGGCTGGCGCAACCCGCCCGCGACGATGCAGGCACTGCTCG AGCGCGGCCAGATCGAATTCGGCCCGGATGAAACCACGCAGCCGCAGCGGATCTACTACCTCGACGAGAACATGTACGAG AACGTGCCGTCGGTGCTGCCGTTCGCGGGCTCCGACGACGCGCTGCTGAAGACGCTCGGCATCCCGTTCGACCTGCCGAA GCCGGTCGACTTCGCGGCGGCCGTGATCGGCTGGTGCACGCGCGGCGACGACATCGTGCTCGACTGCTTCGCCGGCTCCG GTTCGACCGGCCACGCGGTGATGCAGGTGAACGCGACCGACGGCGGCGCGCGCCGCTATATCCTCGTGCAGCTGCCCGAG GCGCTCGACCGCCGCGACAAGACGCAAACCGCGGCCGCCGATTTCTGCGCGAAGCTGAAAAAGCCGCTGACGCTCGCGGA AATCACGAAGGAGCGCCTGCGCCGCGCCGCGCAGCAGGTCGCGCGCGACTATCCGGAAAGCTATGGCGACCTCGGCTTTC GCGTATACCGGCTCGACACGACCAACGTGATCGAATGGGACCCGCGCCGCGACGACTTCGATCATGCCCTCTTCGCGTCC GTCGAACACGTGAAGACCGGCCGCACCGAGGACGACCTGCTCGCCGAGCTGACGCTCAAGCTCGGCCTCGACCTGTGCAC GCCGGTCGAGCATCACCAGGTGGCCGGCAAGACGGTGCACCTGATCGGCCGCGCGATCGTCGCGTGCTTCGACGCACGCA TTTCGCGCGACGACGCGGGCCCGCTCGCCGACGGCATCGTCGACCTGCTCGACGCGAGCGGCGCGTCGCGCGACGTCACG TGCCTGTTCCGCGACAGTGGTTTCGTCGACGACGTCGCGAAGCTCAATCTCGCCGCGCTGCTCGAACAGCACGGCGTGAA GCGCGTGCGGAGCCTGTGA
Upstream 100 bases:
>100_bases TGCGCCGACCGACTCGCTAGCGTTTCGGGTTTGCCCGGGCGGCCATTGCCGCCGGTGCCGTGAGCGCGCCCGACGTCCTG GCGCGCGCGGCGGGGCTCCG
Downstream 100 bases:
>100_bases TGCGGCTGCATTTCGAAGCGGATCTCGACTACCAGCGCGAGGCGATCGACGCCGTCTGCGACCTGTTTCGCGGGCAGGAA TCGTATCGCGGCGACTTCAG
Product: site-specific DNA-methyltransferase (adenine-specific)
Products: NA
Alternate protein names: M.EcoP15I; EcoP15I methyltransferase [H]
Number of amino acids: Translated: 672; Mature: 672
Protein sequence:
>672_residues MEKTMQKLDAASPQAMSTDFTADNVARLKALFPELVTEGPDGASVDVDVLKALVGERTVGDADERYGFHWHGKRAARQAA LTPSTGTLRPCPDDSVAWDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTGQT EAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLMLREIFGEENELGVAVWDKRNPKGD ARGVAYQHESLVLFARNAETLLERAPLKRPKRNAQRMLDAAHDAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSP EGRVYRLVSMAWPNKKKAPDEYFTPLIHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETTQPQRIYYLDENMYE NVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHAVMQVNATDGGARRYILVQLPE ALDRRDKTQTAAADFCAKLKKPLTLAEITKERLRRAAQQVARDYPESYGDLGFRVYRLDTTNVIEWDPRRDDFDHALFAS VEHVKTGRTEDDLLAELTLKLGLDLCTPVEHHQVAGKTVHLIGRAIVACFDARISRDDAGPLADGIVDLLDASGASRDVT CLFRDSGFVDDVAKLNLAALLEQHGVKRVRSL
Sequences:
>Translated_672_residues MEKTMQKLDAASPQAMSTDFTADNVARLKALFPELVTEGPDGASVDVDVLKALVGERTVGDADERYGFHWHGKRAARQAA LTPSTGTLRPCPDDSVAWDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTGQT EAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLMLREIFGEENELGVAVWDKRNPKGD ARGVAYQHESLVLFARNAETLLERAPLKRPKRNAQRMLDAAHDAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSP EGRVYRLVSMAWPNKKKAPDEYFTPLIHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETTQPQRIYYLDENMYE NVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHAVMQVNATDGGARRYILVQLPE ALDRRDKTQTAAADFCAKLKKPLTLAEITKERLRRAAQQVARDYPESYGDLGFRVYRLDTTNVIEWDPRRDDFDHALFAS VEHVKTGRTEDDLLAELTLKLGLDLCTPVEHHQVAGKTVHLIGRAIVACFDARISRDDAGPLADGIVDLLDASGASRDVT CLFRDSGFVDDVAKLNLAALLEQHGVKRVRSL >Mature_672_residues MEKTMQKLDAASPQAMSTDFTADNVARLKALFPELVTEGPDGASVDVDVLKALVGERTVGDADERYGFHWHGKRAARQAA LTPSTGTLRPCPDDSVAWDDTRHLVIEGDNLDVMKLLHKSYAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTGQT EAGVKRSTNTEANGRFHTDWLNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLMLREIFGEENELGVAVWDKRNPKGD ARGVAYQHESLVLFARNAETLLERAPLKRPKRNAQRMLDAAHDAVYRSGNPKDAQKAYRAWMKAQTNLSGGEVMYDRLSP EGRVYRLVSMAWPNKKKAPDEYFTPLIHPVTGKPCAMPARGWRNPPATMQALLERGQIEFGPDETTQPQRIYYLDENMYE NVPSVLPFAGSDDALLKTLGIPFDLPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHAVMQVNATDGGARRYILVQLPE ALDRRDKTQTAAADFCAKLKKPLTLAEITKERLRRAAQQVARDYPESYGDLGFRVYRLDTTNVIEWDPRRDDFDHALFAS VEHVKTGRTEDDLLAELTLKLGLDLCTPVEHHQVAGKTVHLIGRAIVACFDARISRDDAGPLADGIVDLLDASGASRDVT CLFRDSGFVDDVAKLNLAALLEQHGVKRVRSL
Specific function: Binds the system-specific DNA recognition site 5'- CAGCAC-3'. Necessary for both restriction and methylation (of one of the two A's) [H]
COG id: COG2189
COG function: function code L; Adenine specific DNA methylase Mod
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002295 - InterPro: IPR002941 - InterPro: IPR002052 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 74615; Mature: 74615
Theoretical pI: Translated: 6.10; Mature: 6.10
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKTMQKLDAASPQAMSTDFTADNVARLKALFPELVTEGPDGASVDVDVLKALVGERTVG CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCC DADERYGFHWHGKRAARQAALTPSTGTLRPCPDDSVAWDDTRHLVIEGDNLDVMKLLHKS CCHHCCCCEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH YAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTGQTEAGVKRSTNTEANGRFHTDW HCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEHHH LNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLMLREIFGEENELGVAVWDKRNPKGD HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC ARGVAYQHESLVLFARNAETLLERAPLKRPKRNAQRMLDAAHDAVYRSGNPKDAQKAYRA CCCEEEECCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH WMKAQTNLSGGEVMYDRLSPEGRVYRLVSMAWPNKKKAPDEYFTPLIHPVTGKPCAMPAR HHHHHCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCC GWRNPPATMQALLERGQIEFGPDETTQPQRIYYLDENMYENVPSVLPFAGSDDALLKTLG CCCCCHHHHHHHHHCCCEEECCCCCCCCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHC IPFDLPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHAVMQVNATDGGARRYILVQLPE CCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEECCH ALDRRDKTQTAAADFCAKLKKPLTLAEITKERLRRAAQQVARDYPESYGDLGFRVYRLDT HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEECC TNVIEWDPRRDDFDHALFASVEHVKTGRTEDDLLAELTLKLGLDLCTPVEHHQVAGKTVH CCEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHH LIGRAIVACFDARISRDDAGPLADGIVDLLDASGASRDVTCLFRDSGFVDDVAKLNLAAL HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH LEQHGVKRVRSL HHHHHHHHHHCC >Mature Secondary Structure MEKTMQKLDAASPQAMSTDFTADNVARLKALFPELVTEGPDGASVDVDVLKALVGERTVG CCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCC DADERYGFHWHGKRAARQAALTPSTGTLRPCPDDSVAWDDTRHLVIEGDNLDVMKLLHKS CCHHCCCCEECCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHH YAGKVKLVYIDPPYNTGSDFVYPDDFSDSIRHYLAMTGQTEAGVKRSTNTEANGRFHTDW HCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEHHH LNMMYPRLKLAHALLSDEGLIAVHIDEHEVHALVLMLREIFGEENELGVAVWDKRNPKGD HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC ARGVAYQHESLVLFARNAETLLERAPLKRPKRNAQRMLDAAHDAVYRSGNPKDAQKAYRA CCCEEEECCEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH WMKAQTNLSGGEVMYDRLSPEGRVYRLVSMAWPNKKKAPDEYFTPLIHPVTGKPCAMPAR HHHHHCCCCCCCEEEECCCCCCCEEEEEEECCCCCCCCCHHHHCCCCCCCCCCCCCCCCC GWRNPPATMQALLERGQIEFGPDETTQPQRIYYLDENMYENVPSVLPFAGSDDALLKTLG CCCCCHHHHHHHHHCCCEEECCCCCCCCCEEEEECCHHHHCCCCCCCCCCCCHHHHHHHC IPFDLPKPVDFAAAVIGWCTRGDDIVLDCFAGSGSTGHAVMQVNATDGGARRYILVQLPE CCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEEEEEEECCH ALDRRDKTQTAAADFCAKLKKPLTLAEITKERLRRAAQQVARDYPESYGDLGFRVYRLDT HHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCEEEEEECC TNVIEWDPRRDDFDHALFASVEHVKTGRTEDDLLAELTLKLGLDLCTPVEHHQVAGKTVH CCEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHH LIGRAIVACFDARISRDDAGPLADGIVDLLDASGASRDVTCLFRDSGFVDDVAKLNLAAL HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH LEQHGVKRVRSL HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2837577 [H]