Click here to switch to the map view.

The map label for this gene is ybjZ [C]

Identifier: 116626943

GI number: 116626943

Start: 9931307

End: 9932410

Strand: Direct

Name: ybjZ [C]

Synonym: Acid_7920

Alternate gene names: 116626943

Gene position: 9931307-9932410 (Clockwise)

Preceding gene: 116626942

Following gene: 116626944

Centisome position: 99.66

GC content: 59.42

Gene sequence:

>1104_bases
GTGACAGGTAAGCTGGTTTTCGAAAATATCAAGCATAAGCCGATGCGCAGCCTGCTGAGCATCCTGCTGATCGGCGTGCC
GGTGACGTTGATTCTCTGCCTGGTAGGCTTGAGCTACGGGATGATCCAGGATACGCAGAATCGCACCCGCGGGATTGGCG
CGGATATCGTACTGCGTCCCAAGGGGTCGTCCTATATGAGTCTGACGGGCGCGCCGATTCCTCAGCAAATGGTCGCGTTC
ATGGCCAAACAACCCAACATCCAGAGCGCGACCGGGGTGGTAAACCAGACCATTGAGGGCGTTACGCTGGGTGCCGCCGG
AATCAACTTCGCCGAGTTTAACGCCATGAGCGGCGGCTTCAAGTTCATTGAGGGCGGTCCGTTCCGGCGTCCCGATGATG
TCATCATCGATGACTTCTATGCCAACCAGAAGAAGAAGAAGACTGGGGACACGGTCCGGATGCTGAACTCTGATTGGCAC
GTGAGCGGAGTGATTCGCAGCGGCATGCTGGCTCACATCGTCCTGCCGATCGACACCCTGCAGGACAAGACGGGCACCAC
AGGCAAAGTGAGCCAGATCTATATGAAGGTGGTACCGGGCGCGAACGTCAGTGCCACGGTAGAAGCCTTGAAGAAGATAC
CCGGCCTGGAGGACTGGCCCATTTACTCGATCGAGGAGTTTGCTTCCCTGCTGAGTATCGGCAACGTTCCGGGATTGCAG
CCGTTCATCATCGTGATCATGGGGATCGGAGTGGTGATCGGGTTCGCGGTGGTTTGCCTCTCGATGTACATGGCGGTGTT
GCAACGCACGCGCGAGATCGGCATTCTGAAGAGCCTCGGCGGATCGAAGAGCTTCATCCTGCAGGTGATCTTGAGCGAGG
CGCTGCTGCTCGGGATCGGCGGCACGATCCTGGGGATCCTGATGAGCTACGGCGCGTACTGGCTGATCAAGACGCTGGTG
CCGGCATCGCTGCCAATGGTGATTGTGTACCGCTGGTGGCCGATTGCGGGCGGCATCACCATCGTCGGCGCGCTGCTGGG
GTCGCTGTACCCGGGGCTGACGGCGGCGGCGCACGACCCGATCGAGGCGCTGGCGTATGAATAA

Upstream 100 bases:

>100_bases
TGGAACAGCCGGAGGGCACTACGCGGCAGGTAGTCGGAGAGGCGCCGCCCGCCGATACCAAGCCTGCGCCGCCGGCGACC
AAAGGAAGAGTCAAGAAAAA

Downstream 100 bases:

>100_bases
CGGCGACATCATTCAGGTCCGCGACCTGCGCAAGGTGTATCGCGTGGGCAAGGTGGACGTGCCGGCGCTGCGCGGCGTCG
ATCTTGCGGTGAAGAAGGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MTGKLVFENIKHKPMRSLLSILLIGVPVTLILCLVGLSYGMIQDTQNRTRGIGADIVLRPKGSSYMSLTGAPIPQQMVAF
MAKQPNIQSATGVVNQTIEGVTLGAAGINFAEFNAMSGGFKFIEGGPFRRPDDVIIDDFYANQKKKKTGDTVRMLNSDWH
VSGVIRSGMLAHIVLPIDTLQDKTGTTGKVSQIYMKVVPGANVSATVEALKKIPGLEDWPIYSIEEFASLLSIGNVPGLQ
PFIIVIMGIGVVIGFAVVCLSMYMAVLQRTREIGILKSLGGSKSFILQVILSEALLLGIGGTILGILMSYGAYWLIKTLV
PASLPMVIVYRWWPIAGGITIVGALLGSLYPGLTAAAHDPIEALAYE

Sequences:

>Translated_367_residues
MTGKLVFENIKHKPMRSLLSILLIGVPVTLILCLVGLSYGMIQDTQNRTRGIGADIVLRPKGSSYMSLTGAPIPQQMVAF
MAKQPNIQSATGVVNQTIEGVTLGAAGINFAEFNAMSGGFKFIEGGPFRRPDDVIIDDFYANQKKKKTGDTVRMLNSDWH
VSGVIRSGMLAHIVLPIDTLQDKTGTTGKVSQIYMKVVPGANVSATVEALKKIPGLEDWPIYSIEEFASLLSIGNVPGLQ
PFIIVIMGIGVVIGFAVVCLSMYMAVLQRTREIGILKSLGGSKSFILQVILSEALLLGIGGTILGILMSYGAYWLIKTLV
PASLPMVIVYRWWPIAGGITIVGALLGSLYPGLTAAAHDPIEALAYE
>Mature_366_residues
TGKLVFENIKHKPMRSLLSILLIGVPVTLILCLVGLSYGMIQDTQNRTRGIGADIVLRPKGSSYMSLTGAPIPQQMVAFM
AKQPNIQSATGVVNQTIEGVTLGAAGINFAEFNAMSGGFKFIEGGPFRRPDDVIIDDFYANQKKKKTGDTVRMLNSDWHV
SGVIRSGMLAHIVLPIDTLQDKTGTTGKVSQIYMKVVPGANVSATVEALKKIPGLEDWPIYSIEEFASLLSIGNVPGLQP
FIIVIMGIGVVIGFAVVCLSMYMAVLQRTREIGILKSLGGSKSFILQVILSEALLLGIGGTILGILMSYGAYWLIKTLVP
ASLPMVIVYRWWPIAGGITIVGALLGSLYPGLTAAAHDPIEALAYE

Specific function: Unknown

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

Organism=Escherichia coli, GI1787105, Length=334, Percent_Identity=25.748502994012, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 39337; Mature: 39206

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGKLVFENIKHKPMRSLLSILLIGVPVTLILCLVGLSYGMIQDTQNRTRGIGADIVLRP
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHCCCCCCEEEEC
KGSSYMSLTGAPIPQQMVAFMAKQPNIQSATGVVNQTIEGVTLGAAGINFAEFNAMSGGF
CCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCEEECCCCCCHHHHCCCCCCC
KFIEGGPFRRPDDVIIDDFYANQKKKKTGDTVRMLNSDWHVSGVIRSGMLAHIVLPIDTL
EEECCCCCCCCCCCEEEHHHCCCCHHCCCCHHEEECCCCHHHHHHHCCCCEEEEEEHHHH
QDKTGTTGKVSQIYMKVVPGANVSATVEALKKIPGLEDWPIYSIEEFASLLSIGNVPGLQ
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCH
PFIIVIMGIGVVIGFAVVCLSMYMAVLQRTREIGILKSLGGSKSFILQVILSEALLLGIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
GTILGILMSYGAYWLIKTLVPASLPMVIVYRWWPIAGGITIVGALLGSLYPGLTAAAHDP
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHCCCC
IEALAYE
HHHHCCC
>Mature Secondary Structure 
TGKLVFENIKHKPMRSLLSILLIGVPVTLILCLVGLSYGMIQDTQNRTRGIGADIVLRP
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHCCCCCCEEEEC
KGSSYMSLTGAPIPQQMVAFMAKQPNIQSATGVVNQTIEGVTLGAAGINFAEFNAMSGGF
CCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCEEECCCCCCHHHHCCCCCCC
KFIEGGPFRRPDDVIIDDFYANQKKKKTGDTVRMLNSDWHVSGVIRSGMLAHIVLPIDTL
EEECCCCCCCCCCCEEEHHHCCCCHHCCCCHHEEECCCCHHHHHHHCCCCEEEEEEHHHH
QDKTGTTGKVSQIYMKVVPGANVSATVEALKKIPGLEDWPIYSIEEFASLLSIGNVPGLQ
CCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCH
PFIIVIMGIGVVIGFAVVCLSMYMAVLQRTREIGILKSLGGSKSFILQVILSEALLLGIG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
GTILGILMSYGAYWLIKTLVPASLPMVIVYRWWPIAGGITIVGALLGSLYPGLTAAAHDP
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHCCCC
IEALAYE
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]