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The map label for this gene is nifU [H]

Identifier: 116626731

GI number: 116626731

Start: 9677489

End: 9677929

Strand: Direct

Name: nifU [H]

Synonym: Acid_7703

Alternate gene names: 116626731

Gene position: 9677489-9677929 (Clockwise)

Preceding gene: 116626730

Following gene: 116626732

Centisome position: 97.11

GC content: 59.64

Gene sequence:

>441_bases
ATGGTTCACGATCTCTACCAGGAAATTATCCTGGATCACAGCAAGCGTCCCCGCAATTGTCACACCATGGAGAACGCCAC
CGGTCACGCCGATGGCTACAATCCCCTCTGCGGCGACAAGCTGAAGCTCTTCATCCGCATGGAAGGCGATATCGTCCAGG
ATGTCAGCTTCGTCGGCTCCGGCTGCGCCATCTCCACCGCCTCGGCATCGTTGATGACCGAGAGCCTCAAGGGCAAATCC
CGCGCGGAAGCCCTCAAAATGCTCGATAAATTCCACGAGCTGCTGACTACCGACACCGCCGTCAGCCAGGACCTCGGCAA
GCTCGTCGTCTTCTGCGGCGTGCGCGATTACCCCGCGCGCGTCAAGTGCGCCACGCTCGCCTGGCACACCCTTAAATCCG
CGCTCACTAACAACACCGAGGAGCAGGTAAGCACCGAATGA

Upstream 100 bases:

>100_bases
TCCCGGCGACCACCCGCGCCTCGCTCGCGTTCTACAACACCTTTGGCGAAATCGATGCGCTCGTCGGCGGACTCAAAAAG
GTAAAGGAGATTTTCTCCTA

Downstream 100 bases:

>100_bases
CCGTGAAGGACCAGATCTTCGCCGCCTTGAAAAAGGTCTACGACCCGGAGATGCCCGTCAATATCGTCGAGCTCGGCCTG
ATTTATGGCATCGAGGTCGA

Product: NifU family SUF system FeS assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MVHDLYQEIILDHSKRPRNCHTMENATGHADGYNPLCGDKLKLFIRMEGDIVQDVSFVGSGCAISTASASLMTESLKGKS
RAEALKMLDKFHELLTTDTAVSQDLGKLVVFCGVRDYPARVKCATLAWHTLKSALTNNTEEQVSTE

Sequences:

>Translated_146_residues
MVHDLYQEIILDHSKRPRNCHTMENATGHADGYNPLCGDKLKLFIRMEGDIVQDVSFVGSGCAISTASASLMTESLKGKS
RAEALKMLDKFHELLTTDTAVSQDLGKLVVFCGVRDYPARVKCATLAWHTLKSALTNNTEEQVSTE
>Mature_146_residues
MVHDLYQEIILDHSKRPRNCHTMENATGHADGYNPLCGDKLKLFIRMEGDIVQDVSFVGSGCAISTASASLMTESLKGKS
RAEALKMLDKFHELLTTDTAVSQDLGKLVVFCGVRDYPARVKCATLAWHTLKSALTNNTEEQVSTE

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Escherichia coli, GI1788878, Length=136, Percent_Identity=31.6176470588235, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002871
- InterPro:   IPR011341 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 16089; Mature: 16089

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHDLYQEIILDHSKRPRNCHTMENATGHADGYNPLCGDKLKLFIRMEGDIVQDVSFVGS
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCC
GCAISTASASLMTESLKGKSRAEALKMLDKFHELLTTDTAVSQDLGKLVVFCGVRDYPAR
CCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHCCCCCCCCCH
VKCATLAWHTLKSALTNNTEEQVSTE
HHHHHHHHHHHHHHHHCCCHHHHCCC
>Mature Secondary Structure
MVHDLYQEIILDHSKRPRNCHTMENATGHADGYNPLCGDKLKLFIRMEGDIVQDVSFVGS
CHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCC
GCAISTASASLMTESLKGKSRAEALKMLDKFHELLTTDTAVSQDLGKLVVFCGVRDYPAR
CCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHCCCCCCCCCH
VKCATLAWHTLKSALTNNTEEQVSTE
HHHHHHHHHHHHHHHHCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]