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The map label for this gene is fliR [H]

Identifier: 116626500

GI number: 116626500

Start: 9352111

End: 9352884

Strand: Direct

Name: fliR [H]

Synonym: Acid_7463

Alternate gene names: 116626500

Gene position: 9352111-9352884 (Clockwise)

Preceding gene: 116626499

Following gene: 116626501

Centisome position: 93.84

GC content: 62.66

Gene sequence:

>774_bases
ATGCACGGTAATCTTGCGCTTTCAGTCGGCACCCTGTATGCCTTCCTGCTGGTATTGGCCCGCGTGGGAGGGGCCCTGAT
TTTCGTACCCATCCCAGGATTTCGCGGCGCACCGGAAATGGTGCGGGCGGTTCTGGCACTGGGCTTCGCGATGGCCTTAT
TCGGCCGCTGGCCGGCAGTGGATGCGGCCCAGGTCGGGCCAGCCACGCTCGCCGGCTGGCTACTGTCGGAAGCCGCGCTC
GGGCTCGCTATCGGCGTGTCGGTGGCGATCACGCTCGAAGCATTGATGCTGGCGGCTCAAGTGCTCGGTTTACAGGCCGG
TTACGCATACGCTTCCACGATCGACCCGAACACGGAGGCGGACTCCGGAATCCTTCTAGTATTCGCGCAACTGATGTCGG
GCATGCTGTTTTTTGCCATGGGATTAGATCGCGAGATCCTGCGGCTGTTTGCGCAGAGCCTGGACCGCATCCCGGCGGGC
GTCTACATTTTTAGCAGGGCCAGCGCGGAGCCGCTGATCCGGTTGGGGGCGATCCTGTTTTCGGTGGGCGTGCGGCTAGC
CCTGCCGGTGGTGGCGCTGCTGGTGATGCTGGATGTTGCACTCGCGCTGCTCGGACGGCTCAACGCGCAGCTGCAATTGC
TAAGCCTGGCATTTCCCGTCAAGATGCTGACCGCGCTGGTAGTCCTGAGTTGGGCGTCGATCGTTTTTCCGCGGGTAGTG
CGTGAGATCAGCGGTCAAGCCATGATCGCGGCGCACCGGATGTTGGGTCTATGA

Upstream 100 bases:

>100_bases
CGCCTGGTGGCGTTTCTGGCGGGCCTCCTGTTTCTGTTGCCGTGGATGTTGCAGCGCACCATGGCATACACGATTTCGAT
TCTCGGCGACCTGGGGCGGT

Downstream 100 bases:

>100_bases
CGCACCATGGCGGACAAGAGCGGAAAGACCGAACAGCCTACGCAGCGCCGCCTGGAGAAGGCACGCACGGAAGGGCAGTT
TCCCGCCGCCAAAGAGTTCG

Product: type III secretion system inner membrane R protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MHGNLALSVGTLYAFLLVLARVGGALIFVPIPGFRGAPEMVRAVLALGFAMALFGRWPAVDAAQVGPATLAGWLLSEAAL
GLAIGVSVAITLEALMLAAQVLGLQAGYAYASTIDPNTEADSGILLVFAQLMSGMLFFAMGLDREILRLFAQSLDRIPAG
VYIFSRASAEPLIRLGAILFSVGVRLALPVVALLVMLDVALALLGRLNAQLQLLSLAFPVKMLTALVVLSWASIVFPRVV
REISGQAMIAAHRMLGL

Sequences:

>Translated_257_residues
MHGNLALSVGTLYAFLLVLARVGGALIFVPIPGFRGAPEMVRAVLALGFAMALFGRWPAVDAAQVGPATLAGWLLSEAAL
GLAIGVSVAITLEALMLAAQVLGLQAGYAYASTIDPNTEADSGILLVFAQLMSGMLFFAMGLDREILRLFAQSLDRIPAG
VYIFSRASAEPLIRLGAILFSVGVRLALPVVALLVMLDVALALLGRLNAQLQLLSLAFPVKMLTALVVLSWASIVFPRVV
REISGQAMIAAHRMLGL
>Mature_257_residues
MHGNLALSVGTLYAFLLVLARVGGALIFVPIPGFRGAPEMVRAVLALGFAMALFGRWPAVDAAQVGPATLAGWLLSEAAL
GLAIGVSVAITLEALMLAAQVLGLQAGYAYASTIDPNTEADSGILLVFAQLMSGMLFFAMGLDREILRLFAQSLDRIPAG
VYIFSRASAEPLIRLGAILFSVGVRLALPVVALLVMLDVALALLGRLNAQLQLLSLAFPVKMLTALVVLSWASIVFPRVV
REISGQAMIAAHRMLGL

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27007; Mature: 27007

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHGNLALSVGTLYAFLLVLARVGGALIFVPIPGFRGAPEMVRAVLALGFAMALFGRWPAV
CCCCCEEHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
DAAQVGPATLAGWLLSEAALGLAIGVSVAITLEALMLAAQVLGLQAGYAYASTIDPNTEA
CCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCC
DSGILLVFAQLMSGMLFFAMGLDREILRLFAQSLDRIPAGVYIFSRASAEPLIRLGAILF
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
SVGVRLALPVVALLVMLDVALALLGRLNAQLQLLSLAFPVKMLTALVVLSWASIVFPRVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REISGQAMIAAHRMLGL
HHHCCCHHHHHHHHHCC
>Mature Secondary Structure
MHGNLALSVGTLYAFLLVLARVGGALIFVPIPGFRGAPEMVRAVLALGFAMALFGRWPAV
CCCCCEEHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
DAAQVGPATLAGWLLSEAALGLAIGVSVAITLEALMLAAQVLGLQAGYAYASTIDPNTEA
CCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCC
DSGILLVFAQLMSGMLFFAMGLDREILRLFAQSLDRIPAGVYIFSRASAEPLIRLGAILF
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHH
SVGVRLALPVVALLVMLDVALALLGRLNAQLQLLSLAFPVKMLTALVVLSWASIVFPRVV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REISGQAMIAAHRMLGL
HHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]