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The map label for this gene is rfbB [H]

Identifier: 116626472

GI number: 116626472

Start: 9326444

End: 9327757

Strand: Direct

Name: rfbB [H]

Synonym: Acid_7435

Alternate gene names: 116626472

Gene position: 9326444-9327757 (Clockwise)

Preceding gene: 116626470

Following gene: 116626473

Centisome position: 93.59

GC content: 60.43

Gene sequence:

>1314_bases
GTGAACGCAGTTGAATTCCAAGGTGTTTCGAAGAGCTACGCGATCTATGACGCTCCGGGCGATCGCCTCAAGGAGCTGCT
GACCTTTAATCGCCTGAAGCGCCACAAAGACTTTTGGGCGCTCCACGATGTCAGCTTTGAGGTCAAGCGCGGCGAGACCT
TCTGTATTGTGGGCGAAAACGGCTCCGGCAAGAGCACCCTTCTGCAAATGGTGGCCGGGATTCTGCACCCGACGTCGGGC
ACCGCCGAGATCAACGGGCGTGTTTCGGCGCTGCTCGAACTCGGCGCCGGCTTCAATCCGGAATTCAGCGGGCGCGACAA
CGTCTACCTGAACGGCTCGATCCTGGGACTGACCACCCGCCAGATCGATCAGCGGTATAAGGACATCACAGCATTCGCGG
AAATTGGCGAGTTCATCGATCAACCGGTGAAGACCTACTCCAGCGGCATGGTGGTGCGGCTGGCTTTCGCGGTCGCGATC
AATGTGGATCCCGAAATCCTGCTGGTGGACGAAGCGCTGGCGGTCGGCGATATCTATTTTCGCCAGCGCTGCATGCGCAA
GGTTCACGAGCTGCGGCAGCGCGGAATCACCATCCTCTTCGTATCTCACGCGGTCAGCGATGTTAAAGCCATCGGCGACC
GCGTGATGTGGCTGGATCACGGCAGAATGCTCGACATCGGCGAGCCCGATCGTGTGGTTTCGAAATACCTCGCCGCGATG
ACCGAGAAGGATTCCACCTACCTGCTGCGCAAATCCGAGTCCGGGCCGCAGGCGCGCGTGGGTGGACCGGTGCAAGCCCC
CGAGATCGTTGAGACCATTCCGAATATCGATCATCGCTTCGGTGACGGGCGCGCGGAGATCATCGGTATCGCGGTGCTGG
ATGAGCAAGGCCGTCAAATCCATATCCTCGAACCTTCGTCGCGGATTCTGGTGCGCATCAGCGTGCGCGCCAAGGACGAC
GTGCCGATGCCGATCGTGGGGTTCATGCTGCGCAATCAGCTCGGGATGGATTTCTCCGGCACCAATACCGCTCGCGAAGG
CCACGAACTCGCGCCCTTGCAGGCTGGCGACGTGACCACGGTGGATTTCTACGTGGACCTACCCGAGCTTTACCCGGCGT
CCTTCTCGTTCTCCCCCGCGATCGCCGACGGCACCCTGATGGGGTACCAGATGTGCGATTGGATCGATAATGCGATCGCG
CTGCAAATGGGGAGGTCGGAGGCCCAGGTCTACGGCTACATGCACCTCTCCTGCCGCGTCGAGGTCAATTCGCGCGTGCG
CACGGAACCTCAACTGGAGAATCACCTTGGCTGA

Upstream 100 bases:

>100_bases
AAGTCCGAGGGGCCGGTGGCCGCCTTTTTCTTTGCCCGCCGCCTCCGCGTTACACTAAAGCTTGTTCCAATAGCTTCCGA
ATTTTTCGCTTTCCCAAACC

Downstream 100 bases:

>100_bases
GTTCACTGGCGAACGGCTCATTCCCGGCGAGGTCGATATCGACCTGCTCAACGAGCACATGGCGCGATACAATTTCGCGG
CCCGGCTGACTCGCGGCAAG

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MNAVEFQGVSKSYAIYDAPGDRLKELLTFNRLKRHKDFWALHDVSFEVKRGETFCIVGENGSGKSTLLQMVAGILHPTSG
TAEINGRVSALLELGAGFNPEFSGRDNVYLNGSILGLTTRQIDQRYKDITAFAEIGEFIDQPVKTYSSGMVVRLAFAVAI
NVDPEILLVDEALAVGDIYFRQRCMRKVHELRQRGITILFVSHAVSDVKAIGDRVMWLDHGRMLDIGEPDRVVSKYLAAM
TEKDSTYLLRKSESGPQARVGGPVQAPEIVETIPNIDHRFGDGRAEIIGIAVLDEQGRQIHILEPSSRILVRISVRAKDD
VPMPIVGFMLRNQLGMDFSGTNTAREGHELAPLQAGDVTTVDFYVDLPELYPASFSFSPAIADGTLMGYQMCDWIDNAIA
LQMGRSEAQVYGYMHLSCRVEVNSRVRTEPQLENHLG

Sequences:

>Translated_437_residues
MNAVEFQGVSKSYAIYDAPGDRLKELLTFNRLKRHKDFWALHDVSFEVKRGETFCIVGENGSGKSTLLQMVAGILHPTSG
TAEINGRVSALLELGAGFNPEFSGRDNVYLNGSILGLTTRQIDQRYKDITAFAEIGEFIDQPVKTYSSGMVVRLAFAVAI
NVDPEILLVDEALAVGDIYFRQRCMRKVHELRQRGITILFVSHAVSDVKAIGDRVMWLDHGRMLDIGEPDRVVSKYLAAM
TEKDSTYLLRKSESGPQARVGGPVQAPEIVETIPNIDHRFGDGRAEIIGIAVLDEQGRQIHILEPSSRILVRISVRAKDD
VPMPIVGFMLRNQLGMDFSGTNTAREGHELAPLQAGDVTTVDFYVDLPELYPASFSFSPAIADGTLMGYQMCDWIDNAIA
LQMGRSEAQVYGYMHLSCRVEVNSRVRTEPQLENHLG
>Mature_437_residues
MNAVEFQGVSKSYAIYDAPGDRLKELLTFNRLKRHKDFWALHDVSFEVKRGETFCIVGENGSGKSTLLQMVAGILHPTSG
TAEINGRVSALLELGAGFNPEFSGRDNVYLNGSILGLTTRQIDQRYKDITAFAEIGEFIDQPVKTYSSGMVVRLAFAVAI
NVDPEILLVDEALAVGDIYFRQRCMRKVHELRQRGITILFVSHAVSDVKAIGDRVMWLDHGRMLDIGEPDRVVSKYLAAM
TEKDSTYLLRKSESGPQARVGGPVQAPEIVETIPNIDHRFGDGRAEIIGIAVLDEQGRQIHILEPSSRILVRISVRAKDD
VPMPIVGFMLRNQLGMDFSGTNTAREGHELAPLQAGDVTTVDFYVDLPELYPASFSFSPAIADGTLMGYQMCDWIDNAIA
LQMGRSEAQVYGYMHLSCRVEVNSRVRTEPQLENHLG

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=234, Percent_Identity=26.9230769230769, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI153792144, Length=197, Percent_Identity=28.9340101522843, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI27436953, Length=214, Percent_Identity=28.5046728971963, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI150417984, Length=227, Percent_Identity=24.2290748898678, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI30795238, Length=221, Percent_Identity=23.5294117647059, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI27881501, Length=221, Percent_Identity=23.5294117647059, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI116734710, Length=210, Percent_Identity=26.1904761904762, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI27262624, Length=206, Percent_Identity=25.2427184466019, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI27262626, Length=206, Percent_Identity=25.2427184466019, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI27477115, Length=220, Percent_Identity=30, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI6005701, Length=215, Percent_Identity=26.9767441860465, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI47078218, Length=209, Percent_Identity=24.8803827751196, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI45446740, Length=209, Percent_Identity=24.8803827751196, Blast_Score=73, Evalue=5e-13,
Organism=Homo sapiens, GI105990541, Length=200, Percent_Identity=25, Blast_Score=69, Evalue=9e-12,
Organism=Escherichia coli, GI87081709, Length=225, Percent_Identity=28, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87081791, Length=214, Percent_Identity=26.1682242990654, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1789032, Length=219, Percent_Identity=27.8538812785388, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1787547, Length=249, Percent_Identity=26.9076305220884, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790467, Length=216, Percent_Identity=26.8518518518519, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI48995001, Length=198, Percent_Identity=28.2828282828283, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1787712, Length=213, Percent_Identity=28.169014084507, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87081782, Length=234, Percent_Identity=25.2136752136752, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1788761, Length=210, Percent_Identity=27.6190476190476, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI48994943, Length=223, Percent_Identity=27.8026905829596, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787029, Length=225, Percent_Identity=24.4444444444444, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI87082267, Length=264, Percent_Identity=28.4090909090909, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1788210, Length=201, Percent_Identity=29.8507462686567, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788897, Length=229, Percent_Identity=27.5109170305677, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=26.6355140186916, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787792, Length=293, Percent_Identity=26.6211604095563, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1786398, Length=224, Percent_Identity=25.4464285714286, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787164, Length=251, Percent_Identity=28.2868525896414, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788165, Length=189, Percent_Identity=29.1005291005291, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788450, Length=212, Percent_Identity=25.4716981132075, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87082268, Length=236, Percent_Identity=27.9661016949153, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787370, Length=235, Percent_Identity=24.2553191489362, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786319, Length=234, Percent_Identity=22.6495726495727, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=29.5, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1790525, Length=298, Percent_Identity=26.1744966442953, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1786703, Length=204, Percent_Identity=28.4313725490196, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=227, Percent_Identity=27.3127753303965, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI115533608, Length=211, Percent_Identity=26.0663507109005, Blast_Score=80, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17510237, Length=215, Percent_Identity=24.6511627906977, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71983523, Length=208, Percent_Identity=25, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=208, Percent_Identity=25, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=208, Percent_Identity=25, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24643674, Length=255, Percent_Identity=25.4901960784314, Blast_Score=81, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24666092, Length=198, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=5e-14,
Organism=Drosophila melanogaster, GI221512771, Length=220, Percent_Identity=24.0909090909091, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007184, Length=205, Percent_Identity=24.8780487804878, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI221500365, Length=205, Percent_Identity=24.8780487804878, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28573571, Length=222, Percent_Identity=24.3243243243243, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28573573, Length=222, Percent_Identity=24.3243243243243, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28574150, Length=215, Percent_Identity=25.1162790697674, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24648314, Length=205, Percent_Identity=26.8292682926829, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007328, Length=215, Percent_Identity=25.1162790697674, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 48480; Mature: 48480

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAVEFQGVSKSYAIYDAPGDRLKELLTFNRLKRHKDFWALHDVSFEVKRGETFCIVGEN
CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCEEEEECCC
GSGKSTLLQMVAGILHPTSGTAEINGRVSALLELGAGFNPEFSGRDNVYLNGSILGLTTR
CCCHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHCCCCCCCCCCCCCEEECCEEEEEEHH
QIDQRYKDITAFAEIGEFIDQPVKTYSSGMVVRLAFAVAINVDPEILLVDEALAVGDIYF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEECHHHHHHHHH
RQRCMRKVHELRQRGITILFVSHAVSDVKAIGDRVMWLDHGRMLDIGEPDRVVSKYLAAM
HHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHCCEEEEEECCEEECCCCHHHHHHHHHHHH
TEKDSTYLLRKSESGPQARVGGPVQAPEIVETIPNIDHRFGDGRAEIIGIAVLDEQGRQI
CCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCHHCCCCCEEEEEEEEECCCCCEE
HILEPSSRILVRISVRAKDDVPMPIVGFMLRNQLGMDFSGTNTAREGHELAPLQAGDVTT
EEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE
VDFYVDLPELYPASFSFSPAIADGTLMGYQMCDWIDNAIALQMGRSEAQVYGYMHLSCRV
EEEEEECHHHCCCCCCCCCCCCCCEEHHHHHHHHHCCHHEEECCCCCEEEEEEEEEEEEE
EVNSRVRTEPQLENHLG
EECCCCCCCCCHHHCCC
>Mature Secondary Structure
MNAVEFQGVSKSYAIYDAPGDRLKELLTFNRLKRHKDFWALHDVSFEVKRGETFCIVGEN
CCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCEEEEECCC
GSGKSTLLQMVAGILHPTSGTAEINGRVSALLELGAGFNPEFSGRDNVYLNGSILGLTTR
CCCHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHCCCCCCCCCCCCCEEECCEEEEEEHH
QIDQRYKDITAFAEIGEFIDQPVKTYSSGMVVRLAFAVAINVDPEILLVDEALAVGDIYF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEECHHHHHHHHH
RQRCMRKVHELRQRGITILFVSHAVSDVKAIGDRVMWLDHGRMLDIGEPDRVVSKYLAAM
HHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHCCEEEEEECCEEECCCCHHHHHHHHHHHH
TEKDSTYLLRKSESGPQARVGGPVQAPEIVETIPNIDHRFGDGRAEIIGIAVLDEQGRQI
CCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHCCCCCHHCCCCCEEEEEEEEECCCCCEE
HILEPSSRILVRISVRAKDDVPMPIVGFMLRNQLGMDFSGTNTAREGHELAPLQAGDVTT
EEECCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEE
VDFYVDLPELYPASFSFSPAIADGTLMGYQMCDWIDNAIALQMGRSEAQVYGYMHLSCRV
EEEEEECHHHCCCCCCCCCCCCCCEEHHHHHHHHHCCHHEEECCCCCEEEEEEEEEEEEE
EVNSRVRTEPQLENHLG
EECCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]