| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is thrS [H]
Identifier: 116626335
GI number: 116626335
Start: 9156264
End: 9158198
Strand: Direct
Name: thrS [H]
Synonym: Acid_7295
Alternate gene names: 116626335
Gene position: 9156264-9158198 (Clockwise)
Preceding gene: 116626334
Following gene: 116626336
Centisome position: 91.88
GC content: 60.41
Gene sequence:
>1935_bases ATGAGTAACATCCAGATCACTCTGCCCGATGGAAGTACACAGTCGGTCGCGGCAGAGACACGTCCGATCGATATCGCGAA GTCGATCAGCCCTCGCCTGGCAGACGCGGCGCTTGTCGCCAAGGTCAACGGTGAGCTGTTCGACCTCACCCGTCCGATCG AGAAGGACGCGACGCTGGAGATCCTGACGGCGAAGAACCCCGAGTCGCTGGACGTGTACCGCCATTCGACCGCGCACTTG CTGGCGGCCGCTGTGCTGGAGTTGTACCCGGAGACGCAGTTGGGGATCGGCCCGCCGATCGAGAACGGCTTCTATTACGA TTTCGACCGGCCGGCGCCATTCACGCCGGAGGACCTGGAAAAGATCGAGAAAAAGATGTGGGAGATCCAGGCCCGCGCGC TGCCTTACGAGCGGGTGCTGACGCCGAAGGACGAGGGCCTCAAGAAGTACTCCGAGGCTTGGATGAAGTGTCAGCTGATC GACGAGCGAGCCGGCGAAATTTTTACGGAATACACGCTGGGGCCGAAATTCATCGATTTCTGCCGCGGTCCGCACCTGCC CGATACTTCGAAGATCAAGGCGTTCAAACTGCTCTCGATCGCGGGCGCGTACTGGAAGGGCGACGAGAAGAACAAGCAGC TGCAGCGGATCTACGGCACGGCCTTTTTCTCGCCAAAAGACCTGGACGCGTACCTGAAGCAGGTGGAGGAGGCGAAGAAG CGCGACCACCGCAAGCTCGGCAAGGAACTCGACCTGTTCAGCATTCAGGAGCTGGCGGGGCCGGGACTGATTTTCTTCCA TCCCAAAGGCGGGATCATTCGCAAGCTGTTGGAAGACTGGATGCGCGATCAGTACCTGAAGCGCGGATACAGCCTGGTGT ACACGCCGCACGTGGCCAAGCTGGACCTTTGGAAGACTTCCGGTCACGCGAATTTCTACGCGCAGAATATGTTCACGCCG ATCGAGCTGGACGATGCCGAATACCAGCTGAAGCCGATGAACTGCCCGTTCCACATTTTGATTTACGCCGACCGGCAGCG CAGCTATCGCGACCTTCCGGTGCGGTTGGGCGAACTCGGCACGGTATACCGGTACGAACGCTCGGGCACGTTGAACGGAT TGTTCCGCGTTCGCGGGTTTACGCAGGACGACGCACACATCTTCTGTATGCAAAGCCAGGCGGAAGAGGAAGTGGTGAAC TGCCTGCAATTCGCAATCGATACGCTGGCGGCCTATGGGTTTGAGAAATACGACGCCGAAATTTCGACCTGGGATGGCGG CGCGAGCGGCAAGTACGATGGCACTCCGGATCAGTGGGAGATGGCGGAAGGCGCGCTGCGGCGGGCCGTGGACAAGCTGA AGATCAACGCCAAGGTGGTCGCCGATGAAGCGGCTTTCTACGGACCGAAGATCGACGTAAAGCTGGTGGATGCGATCGGG CGCAAGTGGCAGCTCTCCACGGTGCAGTTCGATTTCACGCTGCCGCGGCGGTTCGGGCTGGAGTACATCGGCGAGGATGG CAAGGCGCACCAGCCGATCATGGTGCATCGCGCGTTGTACGGGTCGATCGAGCGCTTCTTCGGGATTCTGGTGGAGCATT ACGCCGGGGCTTTCCCGGTGTGGCTGGCGCCGGTGCAGGCGACGATACTGCCAATTACCGACCGGCAGACGGAGTATGCG CGCGGCATCAAGAAGCAACTGGAGGAGGCGGGCATTCGCGCGACGGTGGACGAGCGCAACGAGAAAGTGAACCTGAAGAT CCGCGATGCACAGATGCAGAAGATCCCGTACATGCTGGTGGTGGGGGATCGCGAGCAGGAGAGCGGGAAGGTTGCGGTGC GCAATCGCAAGCATGCCGACCAGGGCGTCAAGACGCTGGCGGATTTCATCGCGGAGATCCGCGCGCTGATCGAATCCAAA GCCGTTTCGGAGTAG
Upstream 100 bases:
>100_bases CAATTGGGCCTCAAGCTCAGTTTCTAACCGCTCCGGCACGGGGGAATAGGGCTCCCGTGCCGCCCCTTCCCCGCCCCACG TGTTACGCTGAAAATTCCCT
Downstream 100 bases:
>100_bases CCCGATGTACGCCACGTCAGAAGGCACGACGCGGTACGCAGCACGCTTCGCGGAGTTCGCCAGCGCGGCATTCTATCGGA CCGTGATGGGGCTGGAGGTA
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS [H]
Number of amino acids: Translated: 644; Mature: 643
Protein sequence:
>644_residues MSNIQITLPDGSTQSVAAETRPIDIAKSISPRLADAALVAKVNGELFDLTRPIEKDATLEILTAKNPESLDVYRHSTAHL LAAAVLELYPETQLGIGPPIENGFYYDFDRPAPFTPEDLEKIEKKMWEIQARALPYERVLTPKDEGLKKYSEAWMKCQLI DERAGEIFTEYTLGPKFIDFCRGPHLPDTSKIKAFKLLSIAGAYWKGDEKNKQLQRIYGTAFFSPKDLDAYLKQVEEAKK RDHRKLGKELDLFSIQELAGPGLIFFHPKGGIIRKLLEDWMRDQYLKRGYSLVYTPHVAKLDLWKTSGHANFYAQNMFTP IELDDAEYQLKPMNCPFHILIYADRQRSYRDLPVRLGELGTVYRYERSGTLNGLFRVRGFTQDDAHIFCMQSQAEEEVVN CLQFAIDTLAAYGFEKYDAEISTWDGGASGKYDGTPDQWEMAEGALRRAVDKLKINAKVVADEAAFYGPKIDVKLVDAIG RKWQLSTVQFDFTLPRRFGLEYIGEDGKAHQPIMVHRALYGSIERFFGILVEHYAGAFPVWLAPVQATILPITDRQTEYA RGIKKQLEEAGIRATVDERNEKVNLKIRDAQMQKIPYMLVVGDREQESGKVAVRNRKHADQGVKTLADFIAEIRALIESK AVSE
Sequences:
>Translated_644_residues MSNIQITLPDGSTQSVAAETRPIDIAKSISPRLADAALVAKVNGELFDLTRPIEKDATLEILTAKNPESLDVYRHSTAHL LAAAVLELYPETQLGIGPPIENGFYYDFDRPAPFTPEDLEKIEKKMWEIQARALPYERVLTPKDEGLKKYSEAWMKCQLI DERAGEIFTEYTLGPKFIDFCRGPHLPDTSKIKAFKLLSIAGAYWKGDEKNKQLQRIYGTAFFSPKDLDAYLKQVEEAKK RDHRKLGKELDLFSIQELAGPGLIFFHPKGGIIRKLLEDWMRDQYLKRGYSLVYTPHVAKLDLWKTSGHANFYAQNMFTP IELDDAEYQLKPMNCPFHILIYADRQRSYRDLPVRLGELGTVYRYERSGTLNGLFRVRGFTQDDAHIFCMQSQAEEEVVN CLQFAIDTLAAYGFEKYDAEISTWDGGASGKYDGTPDQWEMAEGALRRAVDKLKINAKVVADEAAFYGPKIDVKLVDAIG RKWQLSTVQFDFTLPRRFGLEYIGEDGKAHQPIMVHRALYGSIERFFGILVEHYAGAFPVWLAPVQATILPITDRQTEYA RGIKKQLEEAGIRATVDERNEKVNLKIRDAQMQKIPYMLVVGDREQESGKVAVRNRKHADQGVKTLADFIAEIRALIESK AVSE >Mature_643_residues SNIQITLPDGSTQSVAAETRPIDIAKSISPRLADAALVAKVNGELFDLTRPIEKDATLEILTAKNPESLDVYRHSTAHLL AAAVLELYPETQLGIGPPIENGFYYDFDRPAPFTPEDLEKIEKKMWEIQARALPYERVLTPKDEGLKKYSEAWMKCQLID ERAGEIFTEYTLGPKFIDFCRGPHLPDTSKIKAFKLLSIAGAYWKGDEKNKQLQRIYGTAFFSPKDLDAYLKQVEEAKKR DHRKLGKELDLFSIQELAGPGLIFFHPKGGIIRKLLEDWMRDQYLKRGYSLVYTPHVAKLDLWKTSGHANFYAQNMFTPI ELDDAEYQLKPMNCPFHILIYADRQRSYRDLPVRLGELGTVYRYERSGTLNGLFRVRGFTQDDAHIFCMQSQAEEEVVNC LQFAIDTLAAYGFEKYDAEISTWDGGASGKYDGTPDQWEMAEGALRRAVDKLKINAKVVADEAAFYGPKIDVKLVDAIGR KWQLSTVQFDFTLPRRFGLEYIGEDGKAHQPIMVHRALYGSIERFFGILVEHYAGAFPVWLAPVQATILPITDRQTEYAR GIKKQLEEAGIRATVDERNEKVNLKIRDAQMQKIPYMLVVGDREQESGKVAVRNRKHADQGVKTLADFIAEIRALIESKA VSE
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI38570111, Length=647, Percent_Identity=40.4945904173107, Blast_Score=483, Evalue=1e-136, Organism=Homo sapiens, GI38202255, Length=643, Percent_Identity=40.2799377916019, Blast_Score=481, Evalue=1e-136, Organism=Homo sapiens, GI20070344, Length=659, Percent_Identity=37.4810318664643, Blast_Score=414, Evalue=1e-115, Organism=Escherichia coli, GI1788013, Length=648, Percent_Identity=44.5987654320988, Blast_Score=565, Evalue=1e-162, Organism=Caenorhabditis elegans, GI71984184, Length=640, Percent_Identity=40.46875, Blast_Score=467, Evalue=1e-132, Organism=Caenorhabditis elegans, GI71984192, Length=640, Percent_Identity=40.46875, Blast_Score=467, Evalue=1e-131, Organism=Saccharomyces cerevisiae, GI6322112, Length=651, Percent_Identity=39.7849462365591, Blast_Score=465, Evalue=1e-132, Organism=Saccharomyces cerevisiae, GI6322654, Length=396, Percent_Identity=36.1111111111111, Blast_Score=247, Evalue=5e-66, Organism=Drosophila melanogaster, GI24583842, Length=636, Percent_Identity=39.3081761006289, Blast_Score=484, Evalue=1e-136, Organism=Drosophila melanogaster, GI28574141, Length=636, Percent_Identity=39.3081761006289, Blast_Score=484, Evalue=1e-136, Organism=Drosophila melanogaster, GI24583839, Length=636, Percent_Identity=39.3081761006289, Blast_Score=483, Evalue=1e-136,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR004095 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF02824 TGS; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD [H]
EC number: =6.1.1.3 [H]
Molecular weight: Translated: 73182; Mature: 73051
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNIQITLPDGSTQSVAAETRPIDIAKSISPRLADAALVAKVNGELFDLTRPIEKDATLE CCCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHEEEECCCCEEECCCCCCCCCEEE ILTAKNPESLDVYRHSTAHLLAAAVLELYPETQLGIGPPIENGFYYDFDRPAPFTPEDLE EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHH KIEKKMWEIQARALPYERVLTPKDEGLKKYSEAWMKCQLIDERAGEIFTEYTLGPKFIDF HHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHEEHHHHHHHCCEEHHHCCCHHHHHH CRGPHLPDTSKIKAFKLLSIAGAYWKGDEKNKQLQRIYGTAFFSPKDLDAYLKQVEEAKK HCCCCCCCCCCHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH RDHRKLGKELDLFSIQELAGPGLIFFHPKGGIIRKLLEDWMRDQYLKRGYSLVYTPHVAK HHHHHHCCCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEE LDLWKTSGHANFYAQNMFTPIELDDAEYQLKPMNCPFHILIYADRQRSYRDLPVRLGELG EEEEECCCCCCEEHHCCCCCEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCEECCCCC TVYRYERSGTLNGLFRVRGFTQDDAHIFCMQSQAEEEVVNCLQFAIDTLAAYGFEKYDAE CEEEEECCCCCCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHCCE ISTWDGGASGKYDGTPDQWEMAEGALRRAVDKLKINAKVVADEAAFYGPKIDVKLVDAIG EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCEEEHHHCC RKWQLSTVQFDFTLPRRFGLEYIGEDGKAHQPIMVHRALYGSIERFFGILVEHYAGAFPV CEEEEEEEEEEEECCHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE WLAPVQATILPITDRQTEYARGIKKQLEEAGIRATVDERNEKVNLKIRDAQMQKIPYMLV EEECCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCHHHHCCEEEE VGDREQESGKVAVRNRKHADQGVKTLADFIAEIRALIESKAVSE ECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SNIQITLPDGSTQSVAAETRPIDIAKSISPRLADAALVAKVNGELFDLTRPIEKDATLE CCEEEECCCCCCCCCCCCCCCCHHHHHCCCHHHHHHEEEECCCCEEECCCCCCCCCEEE ILTAKNPESLDVYRHSTAHLLAAAVLELYPETQLGIGPPIENGFYYDFDRPAPFTPEDLE EEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHH KIEKKMWEIQARALPYERVLTPKDEGLKKYSEAWMKCQLIDERAGEIFTEYTLGPKFIDF HHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHEEHHHHHHHCCEEHHHCCCHHHHHH CRGPHLPDTSKIKAFKLLSIAGAYWKGDEKNKQLQRIYGTAFFSPKDLDAYLKQVEEAKK HCCCCCCCCCCHHHHHHHHHHCHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH RDHRKLGKELDLFSIQELAGPGLIFFHPKGGIIRKLLEDWMRDQYLKRGYSLVYTPHVAK HHHHHHCCCCCHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEE LDLWKTSGHANFYAQNMFTPIELDDAEYQLKPMNCPFHILIYADRQRSYRDLPVRLGELG EEEEECCCCCCEEHHCCCCCEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCEECCCCC TVYRYERSGTLNGLFRVRGFTQDDAHIFCMQSQAEEEVVNCLQFAIDTLAAYGFEKYDAE CEEEEECCCCCCEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHCCE ISTWDGGASGKYDGTPDQWEMAEGALRRAVDKLKINAKVVADEAAFYGPKIDVKLVDAIG EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCEEEHHHCC RKWQLSTVQFDFTLPRRFGLEYIGEDGKAHQPIMVHRALYGSIERFFGILVEHYAGAFPV CEEEEEEEEEEEECCHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE WLAPVQATILPITDRQTEYARGIKKQLEEAGIRATVDERNEKVNLKIRDAQMQKIPYMLV EEECCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCHHHHCCEEEE VGDREQESGKVAVRNRKHADQGVKTLADFIAEIRALIESKAVSE ECCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA