Click here to switch to the map view.

The map label for this gene is insF1 [C]

Identifier: 116626296

GI number: 116626296

Start: 9107718

End: 9108650

Strand: Direct

Name: insF1 [C]

Synonym: Acid_7256

Alternate gene names: 116626296

Gene position: 9107718-9108650 (Clockwise)

Preceding gene: 116626295

Following gene: 116626297

Centisome position: 91.39

GC content: 59.59

Gene sequence:

>933_bases
ATGACGCAAGAGCAAGGCAAGTTAAGCATCCAACGGATGTGCCAACTCGTCGGCGTCAGCCGGGCCGGATATTACCGGCA
CTGGGAGGTCGTAGCTCCGGACGAAGCGGAAATGGCGGCCAGGGATGCCATCCAGAAGGTGGTGCTCGCGCACCATCGAC
GGTACGGCTACCGGCGCGTCACCGCGCAACTGCATCGACAGGGAAACATCATCAATCACAAGCGGGTGCTGCGCATTATG
GGTGAGGACAACCTGCTGGCGATCCGCTACCGCAAGTACATTATGACCACCGATTCGCGGCACGACTACCCGGTCTACGT
GAATCTGGCTGCGCGCATGAGATTGACCGGCATCAACCAGCTGTGGATCGCCGACATCACCTACATCCGGCTGCGCACGG
AGTTTGTCTATCTGGCGATCGTGCTCGACCGATTCTCACGTAAGGCAATCGGTTGGTCGCTGGATCGGGCGCTGGCTGCC
CGAATCGCGGTGGCGGCCTTGGAGCAGGCCGTGGAGAGACGGCAGCCGCCGCCGGGCGTGGTGGTGCACAACGATCAGGG
TATCCAGTTTGTCTGCCACGAATTTCAAGAGGTGGTGAAAGCTCACGGGATGGTGCCCAGCCTGAGCCGCCCGGCGAATC
CGTACGACAATGCCGCCTGTGAAAGTTTCATGAAGACGCTGAAGCAGGAGGAAATCTACTGCCACCGGTACCAGGATTTC
GATGAACTTTCCGCCCATGTGGAAGAGTTCATCGAAACCTACTACAACCGGCAACGGCTGCACTCGGCACTGGGCTATCG
GACGCCGGAAGAATTTGAGCGGGATGGCATCTCAGCCCCGAATTCCGGCACCCACAATGCGGCGACCATGCTGGTGTTTA
CTCCGAAGGAAGAAGAGGGTTCCGGCGGGCCAGATTCCATCTCTCCGCGATGA

Upstream 100 bases:

>100_bases
ATAAAGTCCTGGAGATCGAGCTTTTTCAACATGCCTTGCTCAAATTAAAGGAGGCACGGCCACAGCCTGGCGCCTCAGCG
TCTACGAAGTCATCCGTTCG

Downstream 100 bases:

>100_bases
CTCAGGCAAAGAAATGGCACGAAAGGCAAAGTTCGCCCGCTACCGGGAACATCTCCGCACGACCGGGCCGGTCAGCCCTG
GGGGGGCTTCCATCGTCAAG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ISO-S3 31 kDa protein [H]

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTQEQGKLSIQRMCQLVGVSRAGYYRHWEVVAPDEAEMAARDAIQKVVLAHHRRYGYRRVTAQLHRQGNIINHKRVLRIM
GEDNLLAIRYRKYIMTTDSRHDYPVYVNLAARMRLTGINQLWIADITYIRLRTEFVYLAIVLDRFSRKAIGWSLDRALAA
RIAVAALEQAVERRQPPPGVVVHNDQGIQFVCHEFQEVVKAHGMVPSLSRPANPYDNAACESFMKTLKQEEIYCHRYQDF
DELSAHVEEFIETYYNRQRLHSALGYRTPEEFERDGISAPNSGTHNAATMLVFTPKEEEGSGGPDSISPR

Sequences:

>Translated_310_residues
MTQEQGKLSIQRMCQLVGVSRAGYYRHWEVVAPDEAEMAARDAIQKVVLAHHRRYGYRRVTAQLHRQGNIINHKRVLRIM
GEDNLLAIRYRKYIMTTDSRHDYPVYVNLAARMRLTGINQLWIADITYIRLRTEFVYLAIVLDRFSRKAIGWSLDRALAA
RIAVAALEQAVERRQPPPGVVVHNDQGIQFVCHEFQEVVKAHGMVPSLSRPANPYDNAACESFMKTLKQEEIYCHRYQDF
DELSAHVEEFIETYYNRQRLHSALGYRTPEEFERDGISAPNSGTHNAATMLVFTPKEEEGSGGPDSISPR
>Mature_309_residues
TQEQGKLSIQRMCQLVGVSRAGYYRHWEVVAPDEAEMAARDAIQKVVLAHHRRYGYRRVTAQLHRQGNIINHKRVLRIMG
EDNLLAIRYRKYIMTTDSRHDYPVYVNLAARMRLTGINQLWIADITYIRLRTEFVYLAIVLDRFSRKAIGWSLDRALAAR
IAVAALEQAVERRQPPPGVVVHNDQGIQFVCHEFQEVVKAHGMVPSLSRPANPYDNAACESFMKTLKQEEIYCHRYQDFD
ELSAHVEEFIETYYNRQRLHSALGYRTPEEFERDGISAPNSGTHNAATMLVFTPKEEEGSGGPDSISPR

Specific function: Involved in the transposition of the insertion sequence is3 [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=239, Percent_Identity=28.4518828451883, Blast_Score=107, Evalue=1e-23,
Organism=Escherichia coli, GI1788405, Length=283, Percent_Identity=34.982332155477, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1787263, Length=283, Percent_Identity=34.982332155477, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1786753, Length=283, Percent_Identity=34.982332155477, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1786570, Length=283, Percent_Identity=34.982332155477, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1786490, Length=283, Percent_Identity=34.982332155477, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1789981, Length=259, Percent_Identity=33.976833976834, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1790724, Length=231, Percent_Identity=29.8701298701299, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789424, Length=231, Percent_Identity=29.8701298701299, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789224, Length=231, Percent_Identity=29.8701298701299, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788305, Length=231, Percent_Identity=29.8701298701299, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787669, Length=231, Percent_Identity=29.8701298701299, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786558, Length=231, Percent_Identity=29.8701298701299, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 35675; Mature: 35544

Theoretical pI: Translated: 8.56; Mature: 8.56

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQEQGKLSIQRMCQLVGVSRAGYYRHWEVVAPDEAEMAARDAIQKVVLAHHRRYGYRRV
CCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHH
TAQLHRQGNIINHKRVLRIMGEDNLLAIRYRKYIMTTDSRHDYPVYVNLAARMRLTGINQ
HHHHHHCCCCCCHHHHHEEECCCCEEEEEEEEEEEECCCCCCCCEEEEEEEHEEECCCCH
LWIADITYIRLRTEFVYLAIVLDRFSRKAIGWSLDRALAARIAVAALEQAVERRQPPPGV
HHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VVHNDQGIQFVCHEFQEVVKAHGMVPSLSRPANPYDNAACESFMKTLKQEEIYCHRYQDF
EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
DELSAHVEEFIETYYNRQRLHSALGYRTPEEFERDGISAPNSGTHNAATMLVFTPKEEEG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCC
SGGPDSISPR
CCCCCCCCCC
>Mature Secondary Structure 
TQEQGKLSIQRMCQLVGVSRAGYYRHWEVVAPDEAEMAARDAIQKVVLAHHRRYGYRRV
CCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHH
TAQLHRQGNIINHKRVLRIMGEDNLLAIRYRKYIMTTDSRHDYPVYVNLAARMRLTGINQ
HHHHHHCCCCCCHHHHHEEECCCCEEEEEEEEEEEECCCCCCCCEEEEEEEHEEECCCCH
LWIADITYIRLRTEFVYLAIVLDRFSRKAIGWSLDRALAARIAVAALEQAVERRQPPPGV
HHHHHHHHEEHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
VVHNDQGIQFVCHEFQEVVKAHGMVPSLSRPANPYDNAACESFMKTLKQEEIYCHRYQDF
EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCH
DELSAHVEEFIETYYNRQRLHSALGYRTPEEFERDGISAPNSGTHNAATMLVFTPKEEEG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCC
SGGPDSISPR
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2824781 [H]