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The map label for this gene is rbcR [H]

Identifier: 116626275

GI number: 116626275

Start: 9086794

End: 9087726

Strand: Direct

Name: rbcR [H]

Synonym: Acid_7235

Alternate gene names: 116626275

Gene position: 9086794-9087726 (Clockwise)

Preceding gene: 116626272

Following gene: 116626276

Centisome position: 91.18

GC content: 60.77

Gene sequence:

>933_bases
ATGGACTTCGATCAGCTCCACACGTTTCTGGAAATCGTCCGGCTGAAGAGTTTTTCCAAGGCCGCTCAGACCTGCTACCG
CACGCAGCCCGCGATCAGCGCGCAGGTGCGGCAACTCGAACAGGAATTGCGCGCCGACCTGTTCGAGCGCTTCGGCAGCC
GCATTTCGCTTACCACCGCCGGCAAAATCTTTTCCGAATACGCCGAGCAGATGCTCGACCTTCGCCGGCGGGTGCAGGAC
GCCATCGCCGAGCTGGAAACCAACCCGCGCGGCGAACTCGTGATCGCGGCCAACGAAGCCACCTGCATCTACGTTCTTCC
CAAGGTCTTTTCCGAATACCGCTCCCAGTTTCCCGCCGTGCAATTGCAGGTGCTGCGCAGCTATGGCTCGCGCGTGGTGG
AGGCGGTGATGGAGAACTCCGCCGATTTCGGACTCACGCAGCTGCCCGTAGAAGAGAAGCGCCTCCAGGTGGTCAATGTC
TATCGTGACGAGATTCGCCTGATCGCGCCCGCCCGTCATCCTCTGGCGAGCCGCCCGGTCGTCACCGCGCAGGAGGTCGC
CGAACATTTCCTGGTGCTTCCTAAATACGGCAAGACGCGCACGCGTCTCAACGAGTGGCTGGAGGCAGTGGAAGACGAGG
TCCGCATTTCCATGGAATTGGATTCCACGGAAATGATGAAGCACTTCGTGATCGCCGGCCTGGGAGTCAGCTTCATGGCG
GCGTCGAACTGCCGCGAGGAGATCGCCGCCGGAAAACTGCGCGCCGTCCCGCTGGGCCCGGAGCCTATGATGCGCCGCCT
CGGCCTGATTTACCGCAAGGACAAAGCGCTCTCCAAAGCAGCCTTGGGATTTATTCAGGTTGTGCTGGATAATGTAGGGG
AAGAAACGGGGACCCTAAAGGACAAACCAAAGGCTCCCCGGGTTGTTGCCTGA

Upstream 100 bases:

>100_bases
TTACCAAACACGTCGGTGATTGGGAAATTGAACTTTTCTATTACGGCGATTCAAAGCGCCGACGTGGACCGGCCCGGCGA
TTAAGAGCTTCCGGTAGATT

Downstream 100 bases:

>100_bases
TGACGTGCCGCCGCTGCCGTAAGAAGTTTGACGAGTTCGAAACCCGCTGCCCGCATTGCGGGGAGACCAACGATCACGTC
GCCGGCATGTTCCAGACTTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDFDQLHTFLEIVRLKSFSKAAQTCYRTQPAISAQVRQLEQELRADLFERFGSRISLTTAGKIFSEYAEQMLDLRRRVQD
AIAELETNPRGELVIAANEATCIYVLPKVFSEYRSQFPAVQLQVLRSYGSRVVEAVMENSADFGLTQLPVEEKRLQVVNV
YRDEIRLIAPARHPLASRPVVTAQEVAEHFLVLPKYGKTRTRLNEWLEAVEDEVRISMELDSTEMMKHFVIAGLGVSFMA
ASNCREEIAAGKLRAVPLGPEPMMRRLGLIYRKDKALSKAALGFIQVVLDNVGEETGTLKDKPKAPRVVA

Sequences:

>Translated_310_residues
MDFDQLHTFLEIVRLKSFSKAAQTCYRTQPAISAQVRQLEQELRADLFERFGSRISLTTAGKIFSEYAEQMLDLRRRVQD
AIAELETNPRGELVIAANEATCIYVLPKVFSEYRSQFPAVQLQVLRSYGSRVVEAVMENSADFGLTQLPVEEKRLQVVNV
YRDEIRLIAPARHPLASRPVVTAQEVAEHFLVLPKYGKTRTRLNEWLEAVEDEVRISMELDSTEMMKHFVIAGLGVSFMA
ASNCREEIAAGKLRAVPLGPEPMMRRLGLIYRKDKALSKAALGFIQVVLDNVGEETGTLKDKPKAPRVVA
>Mature_310_residues
MDFDQLHTFLEIVRLKSFSKAAQTCYRTQPAISAQVRQLEQELRADLFERFGSRISLTTAGKIFSEYAEQMLDLRRRVQD
AIAELETNPRGELVIAANEATCIYVLPKVFSEYRSQFPAVQLQVLRSYGSRVVEAVMENSADFGLTQLPVEEKRLQVVNV
YRDEIRLIAPARHPLASRPVVTAQEVAEHFLVLPKYGKTRTRLNEWLEAVEDEVRISMELDSTEMMKHFVIAGLGVSFMA
ASNCREEIAAGKLRAVPLGPEPMMRRLGLIYRKDKALSKAALGFIQVVLDNVGEETGTLKDKPKAPRVVA

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=281, Percent_Identity=27.4021352313167, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI157672245, Length=299, Percent_Identity=24.7491638795987, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787806, Length=289, Percent_Identity=24.5674740484429, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI145693105, Length=296, Percent_Identity=25, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787530, Length=245, Percent_Identity=27.7551020408163, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082132, Length=300, Percent_Identity=27, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787879, Length=294, Percent_Identity=27.891156462585, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788296, Length=245, Percent_Identity=26.9387755102041, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1790399, Length=280, Percent_Identity=24.2857142857143, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=23.841059602649, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1788748, Length=300, Percent_Identity=25, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789204, Length=299, Percent_Identity=24.7491638795987, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788887, Length=246, Percent_Identity=23.1707317073171, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=239, Percent_Identity=24.6861924686192, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788297, Length=255, Percent_Identity=25.0980392156863, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI48994962, Length=124, Percent_Identity=33.8709677419355, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787601, Length=142, Percent_Identity=26.056338028169, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790208, Length=278, Percent_Identity=22.6618705035971, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87081904, Length=287, Percent_Identity=20.5574912891986, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34970; Mature: 34970

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFDQLHTFLEIVRLKSFSKAAQTCYRTQPAISAQVRQLEQELRADLFERFGSRISLTTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEHHH
GKIFSEYAEQMLDLRRRVQDAIAELETNPRGELVIAANEATCIYVLPKVFSEYRSQFPAV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEHHHHHHHHHHHCCHH
QLQVLRSYGSRVVEAVMENSADFGLTQLPVEEKRLQVVNVYRDEIRLIAPARHPLASRPV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC
VTAQEVAEHFLVLPKYGKTRTRLNEWLEAVEDEVRISMELDSTEMMKHFVIAGLGVSFMA
CCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHH
ASNCREEIAAGKLRAVPLGPEPMMRRLGLIYRKDKALSKAALGFIQVVLDNVGEETGTLK
HHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DKPKAPRVVA
CCCCCCCCCC
>Mature Secondary Structure
MDFDQLHTFLEIVRLKSFSKAAQTCYRTQPAISAQVRQLEQELRADLFERFGSRISLTTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEHHH
GKIFSEYAEQMLDLRRRVQDAIAELETNPRGELVIAANEATCIYVLPKVFSEYRSQFPAV
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEHHHHHHHHHHHCCHH
QLQVLRSYGSRVVEAVMENSADFGLTQLPVEEKRLQVVNVYRDEIRLIAPARHPLASRPV
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCC
VTAQEVAEHFLVLPKYGKTRTRLNEWLEAVEDEVRISMELDSTEMMKHFVIAGLGVSFMA
CCHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHH
ASNCREEIAAGKLRAVPLGPEPMMRRLGLIYRKDKALSKAALGFIQVVLDNVGEETGTLK
HHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
DKPKAPRVVA
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA