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The map label for this gene is rfbU [H]

Identifier: 116626163

GI number: 116626163

Start: 8941721

End: 8942812

Strand: Direct

Name: rfbU [H]

Synonym: Acid_7123

Alternate gene names: 116626163

Gene position: 8941721-8942812 (Clockwise)

Preceding gene: 116626162

Following gene: 116626164

Centisome position: 89.73

GC content: 63.37

Gene sequence:

>1092_bases
ATGCGCATCGGTGTCAACGCGCTCTACCTGATTCCGGGCGGTGTCGGGGGCACCGAAATCTATCTTCGGTTCCTGTTGCC
GGCGCTCGCCGAAATCGATCCGCACAACCAGTATTTCGTATTCACCAATCGGGAAACCGGGGCCGATCTAGTGCCGCCAC
AGTCCAATTTCACGCACGTTCCGCAAGCTGTGCGGGCCGTCAACCGCCCGGCCCGCCTGCTTTGGGAACAGACCGTGCTG
CCGCTGGCCGCCACGCGCCTTCGCCTCGATGTGCTCTTTAACCCCGGCTTCACCGCGCCGCTCCTGTGCGGATGCCGCCA
GGTCACGGTCTTCCACGACCTGCAGCACAAGCGCCATCCCGAGTACTTCCGCTGGTTCGACCTGCCTTTCTGGAATTTTT
TCCTCTTCTGGAGCGCGAAGGTCTCCCGTGTAGTGATCGCAGTCTCCGATGCAACACGGAACGACCTCCTGCGCTGGTAT
CGCCTGCCGCCCTCCGCGGTGCGCACCATCCCCTCGGGGGTGGATCCGCGCTTCTTCGAGATTGCGGCGCGGCGCGAACC
TGAGTGCTTCCTGCTCGCCGTCTCTACCTTGCACCCGCACAAGAATCTCGATGGACTGCTGCGCGCGTTCGCCGTTTTTC
GTGAACGCCATCCCGGTTACCGCCTCGTCGTAAGCGGCATCCACGGTTTCTTCTCGCCGCAGTTGCACGCGCTGCGCGAG
AGCCTGCAACTCGGTGAAAGTGTGGAATTTCCAGGATGGATCCCGCGCGAAGATCTGTACGACCTTTATCGGCGTGCCGC
CGCCTTCCTGTACCCCAGCCTTTTCGAAGGCTTCGGCTTTCCGGTCCTCGAGGCGCTGGCCGCCGGCGTTCCCACCGCCT
GTTCGGCCATCGAGCCGCTCGATAGTATCGCCGGCGATGCGGCGCTGAAATTCGATCCGCGCGATACCGGCGCCATTGCC
GCTGCCATGCGGAGGCTCATCGAAGATGAGGGGCTGCGCGCGCGATTGGCCACGGCCGGTCCGCCCCGCGCCGCTCAATT
CAAATGGCGTACCACTGCCGAGTTAACTCTCGCGGCACTAGCCGAAAGATAG

Upstream 100 bases:

>100_bases
TCGCCGAATTTCAACACGCGCTCCAACTGGATCCCAGGCTGGAACCGGCGCGCCAGGCACTCGTAGTTACGCAGCGCCGT
ATCAGCAGCGGCCGCTAATC

Downstream 100 bases:

>100_bases
CCCTATTGGACTATGGCACTTCGCCTGCTATTGTCCATGGTAGGGGTGATCGATGAAACGTTTACTGGTATTTGTAACCG
CAATCTCGGCGCTGGCGCCG

Product: group 1 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 363

Protein sequence:

>363_residues
MRIGVNALYLIPGGVGGTEIYLRFLLPALAEIDPHNQYFVFTNRETGADLVPPQSNFTHVPQAVRAVNRPARLLWEQTVL
PLAATRLRLDVLFNPGFTAPLLCGCRQVTVFHDLQHKRHPEYFRWFDLPFWNFFLFWSAKVSRVVIAVSDATRNDLLRWY
RLPPSAVRTIPSGVDPRFFEIAARREPECFLLAVSTLHPHKNLDGLLRAFAVFRERHPGYRLVVSGIHGFFSPQLHALRE
SLQLGESVEFPGWIPREDLYDLYRRAAAFLYPSLFEGFGFPVLEALAAGVPTACSAIEPLDSIAGDAALKFDPRDTGAIA
AAMRRLIEDEGLRARLATAGPPRAAQFKWRTTAELTLAALAER

Sequences:

>Translated_363_residues
MRIGVNALYLIPGGVGGTEIYLRFLLPALAEIDPHNQYFVFTNRETGADLVPPQSNFTHVPQAVRAVNRPARLLWEQTVL
PLAATRLRLDVLFNPGFTAPLLCGCRQVTVFHDLQHKRHPEYFRWFDLPFWNFFLFWSAKVSRVVIAVSDATRNDLLRWY
RLPPSAVRTIPSGVDPRFFEIAARREPECFLLAVSTLHPHKNLDGLLRAFAVFRERHPGYRLVVSGIHGFFSPQLHALRE
SLQLGESVEFPGWIPREDLYDLYRRAAAFLYPSLFEGFGFPVLEALAAGVPTACSAIEPLDSIAGDAALKFDPRDTGAIA
AAMRRLIEDEGLRARLATAGPPRAAQFKWRTTAELTLAALAER
>Mature_363_residues
MRIGVNALYLIPGGVGGTEIYLRFLLPALAEIDPHNQYFVFTNRETGADLVPPQSNFTHVPQAVRAVNRPARLLWEQTVL
PLAATRLRLDVLFNPGFTAPLLCGCRQVTVFHDLQHKRHPEYFRWFDLPFWNFFLFWSAKVSRVVIAVSDATRNDLLRWY
RLPPSAVRTIPSGVDPRFFEIAARREPECFLLAVSTLHPHKNLDGLLRAFAVFRERHPGYRLVVSGIHGFFSPQLHALRE
SLQLGESVEFPGWIPREDLYDLYRRAAAFLYPSLFEGFGFPVLEALAAGVPTACSAIEPLDSIAGDAALKFDPRDTGAIA
AAMRRLIEDEGLRARLATAGPPRAAQFKWRTTAELTLAALAER

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001296 [H]

Pfam domain/function: PF00534 Glycos_transf_1 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 40827; Mature: 40827

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIGVNALYLIPGGVGGTEIYLRFLLPALAEIDPHNQYFVFTNRETGADLVPPQSNFTHV
CEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHH
PQAVRAVNRPARLLWEQTVLPLAATRLRLDVLFNPGFTAPLLCGCRQVTVFHDLQHKRHP
HHHHHHHCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHCCHHHHHHHHHHHCCCC
EYFRWFDLPFWNFFLFWSAKVSRVVIAVSDATRNDLLRWYRLPPSAVRTIPSGVDPRFFE
CHHEEECCCHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHCCCHHHHHHCCCCCCCHHHH
IAARREPECFLLAVSTLHPHKNLDGLLRAFAVFRERHPGYRLVVSGIHGFFSPQLHALRE
HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCHHHHHHHH
SLQLGESVEFPGWIPREDLYDLYRRAAAFLYPSLFEGFGFPVLEALAAGVPTACSAIEPL
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH
DSIAGDAALKFDPRDTGAIAAAMRRLIEDEGLRARLATAGPPRAAQFKWRTTAELTLAAL
HHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCHHHHHHHHH
AER
HCC
>Mature Secondary Structure
MRIGVNALYLIPGGVGGTEIYLRFLLPALAEIDPHNQYFVFTNRETGADLVPPQSNFTHV
CEECCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHH
PQAVRAVNRPARLLWEQTVLPLAATRLRLDVLFNPGFTAPLLCGCRQVTVFHDLQHKRHP
HHHHHHHCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHCCHHHHHHHHHHHCCCC
EYFRWFDLPFWNFFLFWSAKVSRVVIAVSDATRNDLLRWYRLPPSAVRTIPSGVDPRFFE
CHHEEECCCHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHCCCHHHHHHCCCCCCCHHHH
IAARREPECFLLAVSTLHPHKNLDGLLRAFAVFRERHPGYRLVVSGIHGFFSPQLHALRE
HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCHHHHHHHH
SLQLGESVEFPGWIPREDLYDLYRRAAAFLYPSLFEGFGFPVLEALAAGVPTACSAIEPL
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHH
DSIAGDAALKFDPRDTGAIAAAMRRLIEDEGLRARLATAGPPRAAQFKWRTTAELTLAAL
HHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCHHHHHHHHH
AER
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]